cassava31953.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava31953.m1 T246462_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.848 0.848
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava31953.m1 LOB 36 134

Links

Other LOB family TFs
Other Manihot esculenta TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29729.m002335 Ricinus communis 29729.m002335 I 0.889
29957.m001411 Ricinus communis 29957.m001411 I 0.909
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.869
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.889
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
LBD15 Arabidopsis thaliana AT2G40470 I 0.869
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.788
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.798
Bo3g034980 Brassica oleracea Bo3g034980 I 0.869
Bo4g012620 Brassica oleracea Bo4g012620 I 0.848
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
Bo4g172950 Brassica oleracea Bo4g172950 I 0.848
Bo4g190140 Brassica oleracea Bo4g190140 I 0.763
Bo4g190210 Brassica oleracea Bo4g190210 I 0.848
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.869
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
Bra000188 Brassica rapa Bra000188 I 0.869
Bra004572 Brassica rapa Bra004572 I 0.848
Bra016992 Brassica rapa Bra016992 I 0.859
Bra018320 Brassica rapa Bra018320 I 0.848
Bra021627 Brassica rapa Bra021627 I 0.848
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.768
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.798
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.869
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.869
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.889
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.879
Ca_04126 Cicer arietinum Ca_04126 I 0.859
Ca_12420 Cicer arietinum Ca_12420 I 0.848
Ca_15642 Cicer arietinum Ca_15642 I 0.859
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.879
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.859
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.859
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.848
Cla007391 Citrullus lanatus Cla007391 I 0.848
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.848
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.828
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.899
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.909
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.889
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.889
F775_25790 Aegilops tauschii F775_25790 I 0.798
F775_52636 Aegilops tauschii F775_52636 I 0.778
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.848
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.869
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.889
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.828
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.879
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.879
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.889
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.889
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.869
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.889
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.798
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.818
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.848
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.808
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.808
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.808
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.828
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.828
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.804
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.788
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.788
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.909
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.919
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.778
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.778
MDP0000278334 Malus domestica MDP0000278334 I 0.859
mgf011471m Mimulus guttatus mgf011471m I 0.869
mgf020556m Mimulus guttatus mgf020556m I 0.828
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.798
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.778
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.859
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.859
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.848
OB01G44400 Oryza brachyantha OB01G44400 I 0.788
OB05G14280 Oryza brachyantha OB05G14280 I 0.862
OBART01G35680 Oryza barthii OBART01G35680 I 0.788
OBART05G04570 Oryza barthii OBART05G04570 I 0.798
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.788
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.798
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.788
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.747
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.788
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.798
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.788
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.798
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.788
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.848
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.859
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.788
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.798
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.788
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.798
OS01G0825000 Oryza sativa OS01G0825000 I 0.788
OS05G0165450 Oryza sativa OS05G0165450 I 0.798
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.818
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.768
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.778
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.828
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.798
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.869
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.889
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.859
PK03716.1 Cannabis sativa PK03716.1 I 0.794
PK17217.1 Cannabis sativa PK17217.1 I 0.869
PK18922.1 Cannabis sativa PK18922.1 I 0.702
PK21617.1 Cannabis sativa PK21617.1 I 0.957
PK29334.1 Cannabis sativa PK29334.1 I 0.734
Pm000277 Prunus mume Pm000277 I 0.859
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.859
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.899
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.879
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.889
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.869
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.879
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.899
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.778
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.828
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.828
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.828
Si004575m.g Setaria italica Si004575m.g I 0.788
Si012018m.g Setaria italica Si012018m.g I 0.818
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.889
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.889
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.869
TCM_042262 Theobroma cacao TCM_042262 I 0.889
TCM_045438 Theobroma cacao TCM_045438 I 0.889
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.879
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.788
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.778
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.778
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.778
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.849
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.798
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.704
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.828
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.889