cassava29545.valid.m1 (Manihot esculenta)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 cassava29545.valid.m1 T261349_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava29545.valid.m1 MBD 83 156

Links

Other MBD family TFs
Other Manihot esculenta TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29703.m001533 Ricinus communis 29703.m001533 N 0.905
MBD4 Arabidopsis thaliana AT3G63030 N 0.743
MBD1 Arabidopsis thaliana AT4G22745 N 0.716
Bo4g098290 Brassica oleracea Bo4g098290 N 0.726
Bo8g098350 Brassica oleracea Bo8g098350 N 0.716
Bostr.13158s0305 Boechera stricta Bostr.13158s0305 N 0.770
Bostr.7867s0060 Boechera stricta Bostr.7867s0060 N 0.743
Bra007723 Brassica rapa Bra007723 N 0.716
Bra040421 Brassica rapa Bra040421 N 0.726
Cagra.0664s0040 Capsella grandiflora Cagra.0664s0040 N 0.743
Carubv10018085m.g Capsella rubella Carubv10018085m.g N 0.743
cassava29544.valid.m1 Manihot esculenta cassava29544.valid.m1 N 1.000
Ciclev10022348m.g Citrus clementina Ciclev10022348m.g N 0.797
Eucgr.H01546 Eucalyptus grandis Eucgr.H01546 N 0.743
evm.TU.supercontig_9.132 Carica papaya evm.TU.supercontig_9.132 N 0.811
gene27736-v1.0-hybrid Fragaria vesca gene27736-v1.0-hybrid N 0.703
GLYMA02G16930 Glycine max GLYMA02G16930 N 0.730
GLYMA10G02860 Glycine max GLYMA10G02860 N 0.730
Lus10008176.g Linum usitatissimum Lus10008176.g N 0.824
Lus10027980.g Linum usitatissimum Lus10027980.g N 0.838
Lus10029631.g Linum usitatissimum Lus10029631.g N 0.797
Lus10042674.g Linum usitatissimum Lus10042674.g N 0.784
orange1.1g029175m.g Citrus sinensis orange1.1g029175m.g N 0.797
PK28604.1 Cannabis sativa PK28604.1 N 0.716
POPTR_0002s22900 Populus trichocarpa POPTR_0002s22900 N 0.892
POPTR_0014s13300 Populus trichocarpa POPTR_0014s13300 N 0.905
SapurV1A.0053s0440 Salix purpurea SapurV1A.0053s0440 N 0.905
SapurV1A.0135s0370 Salix purpurea SapurV1A.0135s0370 N 0.784
SapurV1A.0633s0290 Salix purpurea SapurV1A.0633s0290 N 0.811
SapurV1A.0633s0300 Salix purpurea SapurV1A.0633s0300 N 0.811
MBD4 Arabidopsis lyrata scaffold_503585.1 N 0.743
MBD1 Arabidopsis lyrata scaffold_702078.1 N 0.730
Thhalv10001805m.g Eutrema salsugineum Thhalv10001805m.g N 0.784
Thhalv10006277m.g Eutrema salsugineum Thhalv10006277m.g N 0.716