29703.m001533 (Ricinus communis)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 29703.m001533 T261323_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
29703.m001533 MBD 62 135

Links

Other MBD family TFs
Other Ricinus communis TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava29544.valid.m1 Manihot esculenta cassava29544.valid.m1 N 0.905
cassava29545.valid.m1 Manihot esculenta cassava29545.valid.m1 N 0.905
POPTR_0002s22900 Populus trichocarpa POPTR_0002s22900 N 0.865
POPTR_0014s13300 Populus trichocarpa POPTR_0014s13300 N 0.865
SapurV1A.0053s0440 Salix purpurea SapurV1A.0053s0440 N 0.865
Lus10027980.g Linum usitatissimum Lus10027980.g N 0.838
Lus10008176.g Linum usitatissimum Lus10008176.g N 0.824
Thhalv10001805m.g Eutrema salsugineum Thhalv10001805m.g N 0.811
Eucgr.H01546 Eucalyptus grandis Eucgr.H01546 N 0.797
evm.TU.supercontig_9.132 Carica papaya evm.TU.supercontig_9.132 N 0.797
Lus10029631.g Linum usitatissimum Lus10029631.g N 0.797
MBD1 Arabidopsis lyrata scaffold_702078.1 N 0.784
Bostr.13158s0305 Boechera stricta Bostr.13158s0305 N 0.784
Lus10042674.g Linum usitatissimum Lus10042674.g N 0.784
MBD4 Arabidopsis thaliana AT3G63030 N 0.770
MBD1 Arabidopsis thaliana AT4G22745 N 0.770
GLYMA02G16930 Glycine max GLYMA02G16930 N 0.770
GLYMA10G02860 Glycine max GLYMA10G02860 N 0.770
MBD4 Arabidopsis lyrata scaffold_503585.1 N 0.770
Bostr.7867s0060 Boechera stricta Bostr.7867s0060 N 0.770
Ciclev10022348m.g Citrus clementina Ciclev10022348m.g N 0.767
orange1.1g029175m.g Citrus sinensis orange1.1g029175m.g N 0.767
Bo8g098350 Brassica oleracea Bo8g098350 N 0.757
Bra007723 Brassica rapa Bra007723 N 0.757
Cagra.0664s0040 Capsella grandiflora Cagra.0664s0040 N 0.757
Carubv10018085m.g Capsella rubella Carubv10018085m.g N 0.757
SapurV1A.0633s0290 Salix purpurea SapurV1A.0633s0290 N 0.757
SapurV1A.0633s0300 Salix purpurea SapurV1A.0633s0300 N 0.757
Thhalv10006277m.g Eutrema salsugineum Thhalv10006277m.g N 0.743
chr5.CM0909.10.nc Lotus japonicus chr5.CM0909.10.nc N 0.743
Pm019897 Prunus mume Pm019897 N 0.730
SapurV1A.0135s0370 Salix purpurea SapurV1A.0135s0370 N 0.730
gene27736-v1.0-hybrid Fragaria vesca gene27736-v1.0-hybrid N 0.716
PK28604.1 Cannabis sativa PK28604.1 N 0.716
LjSGA_013286.1 Lotus japonicus LjSGA_013286.1 N 0.716
Bo4g098290 Brassica oleracea Bo4g098290 N 0.712
Bra040421 Brassica rapa Bra040421 N 0.712