Bra006811 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra006811 T267779_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAX3
M02700_2.00 		Arabidopsis thaliana
SCACCTACCHCCN
NGGDGGTAGGTGS		 SELEX
Mathelier et al.(2014)
MA0576.1 		0.819 0.871
RAX3
M11043_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB84_01 		0.819 0.871
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra006811.1-P Myb 14 62
Bra006811.1-P Myb 68 113

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

477 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30078.m002307 Ricinus communis 30078.m002307 N
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N
SIGF Arabidopsis thaliana AT2G36990 N
Bo4g186560 Brassica oleracea Bo4g186560 N
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N
Bra017213 Brassica rapa Bra017213 N
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N
Carubv10022939m.g Capsella rubella Carubv10022939m.g N
cassava35219.m1 Manihot esculenta cassava35219.m1 N
Ca_12052 Cicer arietinum Ca_12052 N
Ca_17153 Cicer arietinum Ca_17153 N
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N
Cla018594 Citrullus lanatus Cla018594 N
Cucsa.124610 Cucumis sativus Cucsa.124610 N
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N
GLYMA03G33970 Glycine max GLYMA03G33970 N
GLYMA10G06500 Glycine max GLYMA10G06500 N
GLYMA13G20700 Glycine max GLYMA13G20700 N
GLYMA19G36710 Glycine max GLYMA19G36710 N
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N
mgf007606m Mimulus guttatus mgf007606m N
MTR_1g063850 Medicago truncatula MTR_1g063850 N
MTR_7g101840 Medicago truncatula MTR_7g101840 N
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N
Pm030137 Prunus mume Pm030137 N
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N
TCM_022198 Theobroma cacao TCM_022198 N
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N
SIGF Vitis vinifera VIT_08s0040g01560 N