AMTR_s00009p00072720 (Amborella trichopoda)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 AMTR_s00009p00072720 T323748_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ERM94834 Sigma 70 338 408

Links

Other Sigma 70 family TFs
Other Amborella trichopoda TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.803
mgf007606m Mimulus guttatus mgf007606m N 0.803
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.803
SIGF Arabidopsis thaliana AT2G36990 N 0.789
Bo4g186560 Brassica oleracea Bo4g186560 N 0.789
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.789
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.789
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.789
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.789
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.789
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.784
Bra017213 Brassica rapa Bra017213 N 0.775
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.761
TCM_022198 Theobroma cacao TCM_022198 N 0.761
Ca_12052 Cicer arietinum Ca_12052 N 0.761
30078.m002307 Ricinus communis 30078.m002307 N 0.761
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N 0.761
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.761
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.761
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.761
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.746
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.746
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.746
SIGF Vitis vinifera VIT_08s0040g01560 N 0.746
Cla018594 Citrullus lanatus Cla018594 N 0.746
Pm030137 Prunus mume Pm030137 N 0.746
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.746
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.746
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.746
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.732
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.732
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.732
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.732
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.732
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N 0.732
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.732
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.732
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.718
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.718
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.718
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.704