SIGF (Arabidopsis lyrata)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 fgenesh2_kg.4__1742__AT2G36990.1 T323828_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.4__1742__AT2G36990.1 Sigma 70 310 380

Links

Other Sigma 70 family TFs
Other Arabidopsis lyrata TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SIGF Arabidopsis thaliana AT2G36990 N 1.000
Bo4g186560 Brassica oleracea Bo4g186560 N 1.000
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 1.000
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 1.000
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 1.000
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 1.000
Bra017213 Brassica rapa Bra017213 N 0.986
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.873
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.873
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.873
TCM_022198 Theobroma cacao TCM_022198 N 0.859
mgf007606m Mimulus guttatus mgf007606m N 0.859
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.859
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.859
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.845
Cla018594 Citrullus lanatus Cla018594 N 0.845
Pm030137 Prunus mume Pm030137 N 0.845
30078.m002307 Ricinus communis 30078.m002307 N 0.845
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.845
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.845
SIGF Vitis vinifera VIT_08s0040g01560 N 0.831
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.824
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.817
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.817
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.811
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.803
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.789
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.789
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.789
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.789
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N 0.779
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.775
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.775
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N 0.765
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.761
Ca_12052 Cicer arietinum Ca_12052 N 0.761
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.732
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.732
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.732
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.732
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.732
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.704