30078.m002307 (Ricinus communis)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 30078.m002307 T324072_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
30078.m002307 Sigma 70 312 382

Links

Other Sigma 70 family TFs
Other Ricinus communis TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.930
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.930
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.930
Pm030137 Prunus mume Pm030137 N 0.930
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.930
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.915
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.915
TCM_022198 Theobroma cacao TCM_022198 N 0.901
Cla018594 Citrullus lanatus Cla018594 N 0.901
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.901
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.901
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.887
SIGF Vitis vinifera VIT_08s0040g01560 N 0.887
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.873
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.873
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.859
SIGF Arabidopsis thaliana AT2G36990 N 0.845
Bo4g186560 Brassica oleracea Bo4g186560 N 0.845
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.845
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.845
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.845
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.845
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.845
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.845
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.845
Bra017213 Brassica rapa Bra017213 N 0.831
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.831
mgf007606m Mimulus guttatus mgf007606m N 0.831
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.831
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.817
Ca_12052 Cicer arietinum Ca_12052 N 0.817
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.803
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.803
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.789
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.789
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.761
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.761
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.757
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.746
Ca_17153 Cicer arietinum Ca_17153 N 0.746
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N 0.735
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N 0.721
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.718