TCM_022198 (Theobroma cacao)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04542 (Sigma70_r2) IPR007627 TCM_022198 T324001_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
EOY07878 Sigma 70 332 402

Links

Other Sigma 70 family TFs
Other Theobroma cacao TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.944
30078.m002307 Ricinus communis 30078.m002307 N 0.901
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.887
Pm030137 Prunus mume Pm030137 N 0.887
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.887
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.873
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 0.859
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.859
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 0.859
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.859
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N 0.859
Cla018594 Citrullus lanatus Cla018594 N 0.859
Bo4g186560 Brassica oleracea Bo4g186560 N 0.859
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 0.859
SIGF Arabidopsis thaliana AT2G36990 N 0.859
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 0.859
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.845
mgf007606m Mimulus guttatus mgf007606m N 0.845
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.845
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.845
SIGF Vitis vinifera VIT_08s0040g01560 N 0.845
Bra017213 Brassica rapa Bra017213 N 0.845
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.831
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.831
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.831
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.817
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.803
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.803
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.803
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.775
Ca_12052 Cicer arietinum Ca_12052 N 0.775
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.761
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.761
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.761
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.761
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.761
Ca_17153 Cicer arietinum Ca_17153 N 0.718
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.704
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.704
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.703