Cagra.0558s0014 (Capsella grandiflora)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Cagra.0558s0014 T324155_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0558s0014.1.p Sigma 70 311 381

Links

Other Sigma 70 family TFs
Other Capsella grandiflora TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SIGF Arabidopsis thaliana AT2G36990 N 1.000
Bo4g186560 Brassica oleracea Bo4g186560 N 1.000
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N 1.000
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N 1.000
Carubv10022939m.g Capsella rubella Carubv10022939m.g N 1.000
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N 1.000
Bra017213 Brassica rapa Bra017213 N 0.986
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N 0.873
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N 0.873
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N 0.873
TCM_022198 Theobroma cacao TCM_022198 N 0.859
mgf007606m Mimulus guttatus mgf007606m N 0.859
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N 0.859
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N 0.859
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N 0.845
Cla018594 Citrullus lanatus Cla018594 N 0.845
Pm030137 Prunus mume Pm030137 N 0.845
30078.m002307 Ricinus communis 30078.m002307 N 0.845
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N 0.845
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N 0.845
SIGF Vitis vinifera VIT_08s0040g01560 N 0.831
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N 0.824
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N 0.817
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N 0.817
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.811
cassava35219.m1 Manihot esculenta cassava35219.m1 N 0.803
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N 0.789
MTR_7g101840 Medicago truncatula MTR_7g101840 N 0.789
Cucsa.124610 Cucumis sativus Cucsa.124610 N 0.789
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N 0.789
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N 0.779
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N 0.775
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N 0.775
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N 0.765
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.761
Ca_12052 Cicer arietinum Ca_12052 N 0.761
GLYMA03G33970 Glycine max GLYMA03G33970 N 0.732
GLYMA05G22730 Glycine max GLYMA05G22730 N 0.732
GLYMA10G06500 Glycine max GLYMA10G06500 N 0.732
GLYMA13G20700 Glycine max GLYMA13G20700 N 0.732
GLYMA19G36710 Glycine max GLYMA19G36710 N 0.732
MTR_1g063850 Medicago truncatula MTR_1g063850 N 0.704