Pavir.Fb01820 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Fb01820 T289200_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.836 0.892
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.836 0.892
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.808 0.828
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.808 0.828
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.783 0.785
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.781 0.796
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.781 0.796
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.748 0.763
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.716 0.806
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.686 0.774
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.686 0.774
ATY53
M07078_2.00 		Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR		 Dap-seq
OMalley et al.(2016)
MYB67_col_a 		0.685 0.677
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.685 0.688
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.685 0.688
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.685 0.688
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.684 0.763
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.684 0.763
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.674 0.785
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.674 0.785
AtMYB10
M07081_2.00 		Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB10_col_a 		0.661 0.699
AtMYB10
M07082_2.00 		Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB10_colamp_a 		0.661 0.699
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.661 0.688
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.661 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01820.1.p Myb 14 61
Pavir.Fb01820.1.p Myb 67 112

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

986 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29788.m000340 Ricinus communis 29788.m000340 I
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.661
MYB21 Arabidopsis thaliana AT3G27810 I
ATMYB48 Arabidopsis thaliana AT3G46130 I
MYB27 Arabidopsis thaliana AT3G53200 D
WER Arabidopsis thaliana AT5G14750 D
MYB86 Arabidopsis thaliana AT5G26660 I 0.670
TT2 Arabidopsis thaliana AT5G35550 I
MYB24 Arabidopsis thaliana AT5G40350 D
MYB59 Arabidopsis thaliana AT5G59780 D
BGIOSGA005283 Oryza indica BGIOSGA005283 I
BGIOSGA013008 Oryza indica BGIOSGA013008 N
BGIOSGA019054 Oryza indica BGIOSGA019054 I
BGIOSGA027658 Oryza indica BGIOSGA027658 N
BGIOSGA033532 Oryza indica BGIOSGA033532 I
BGIOSGA035986 Oryza indica BGIOSGA035986 I
BGIOSGA037085 Oryza indica BGIOSGA037085 N
Bo2g011790 Brassica oleracea Bo2g011790 N
Bo3g130340 Brassica oleracea Bo3g130340 I
Bo5g131980 Brassica oleracea Bo5g131980 N
Bo8g082570 Brassica oleracea Bo8g082570 I
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N
Bostr.9544s0002 Boechera stricta Bostr.9544s0002 I
Bra009910 Brassica rapa Bra009910 N
Bra018223 Brassica rapa Bra018223 I
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I
BRADI2G37377 Brachypodium distachyon BRADI2G37377 I
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N
Cagra.0612s0043 Capsella grandiflora Cagra.0612s0043 I
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.783
Carubv10017875m.g Capsella rubella Carubv10017875m.g I
Carubv10019409m.g Capsella rubella Carubv10019409m.g I
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I
Ca_02593 Cicer arietinum Ca_02593 I
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I
Ciclev10029019m.g Citrus clementina Ciclev10029019m.g N
Cla008413 Citrullus lanatus Cla008413 I
Cla013488 Citrullus lanatus Cla013488 I
Cla023001 Citrullus lanatus Cla023001 N
Cucsa.061660 Cucumis sativus Cucsa.061660 I
Cucsa.089670 Cucumis sativus Cucsa.089670 N
Cucsa.213500 Cucumis sativus Cucsa.213500 I
Cucsa.379880 Cucumis sativus Cucsa.379880 I
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N
Eucgr.J00892 Eucalyptus grandis Eucgr.J00892 N
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I
evm.TU.supercontig_87.85 Carica papaya evm.TU.supercontig_87.85 N
evm.TU.supercontig_92.99 Carica papaya evm.TU.supercontig_92.99 I
F775_06315 Aegilops tauschii F775_06315 I
F775_14172 Aegilops tauschii F775_14172 I
F775_22650 Aegilops tauschii F775_22650 N
F775_28589 Aegilops tauschii F775_28589 I
F775_29427 Aegilops tauschii F775_29427 I
F775_32151 Aegilops tauschii F775_32151 N
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I
AtMYB27 Arabidopsis lyrata fgenesh2_kg.5__1687__AT3G53200.1 I
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N
GLYMA10G06680 Glycine max GLYMA10G06680 N
GLYMA13G40830 Glycine max GLYMA13G40830 I
GLYMA14G10483 Glycine max GLYMA14G10483 I
GLYMA15G04620 Glycine max GLYMA15G04620 I
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I
Gorai.004G145800 Gossypium raimondii Gorai.004G145800 I
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.697
GRMZM2G013581 Zea mays GRMZM2G013581 N
GRMZM2G047626 Zea mays GRMZM2G047626 I
GRMZM2G048136 Zea mays GRMZM2G048136 I
GRMZM2G106558 Zea mays GRMZM2G106558 I
GRMZM2G130149 Zea mays GRMZM2G130149 I
GRMZM2G305856 Zea mays GRMZM2G305856 I
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I
LjSGA_032074.1 Lotus japonicus LjSGA_032074.1 N
LjSGA_067208.1 Lotus japonicus LjSGA_067208.1 N
LPERR01G40120 Leersia perrieri LPERR01G40120 I
LPERR05G01030 Leersia perrieri LPERR05G01030 I
LPERR12G13390 Leersia perrieri LPERR12G13390 I
Lus10005886.g Linum usitatissimum Lus10005886.g I
MDP0000139931 Malus domestica MDP0000139931 N
MDP0000143156 Malus domestica MDP0000143156 I
MDP0000153773 Malus domestica MDP0000153773 N
MDP0000169874 Malus domestica MDP0000169874 N
MDP0000177010 Malus domestica MDP0000177010 I
MDP0000244980 Malus domestica MDP0000244980 N
MDP0000470422 Malus domestica MDP0000470422 N
MDP0000475808 Malus domestica MDP0000475808 N
mgf001247m Mimulus guttatus mgf001247m N
mgf009707m Mimulus guttatus mgf009707m N
mgf018110m Mimulus guttatus mgf018110m N
mgf020363m Mimulus guttatus mgf020363m I
mgf021749m Mimulus guttatus mgf021749m N
mgf024109m Mimulus guttatus mgf024109m N
mgf025691m Mimulus guttatus mgf025691m I
MLOC_16981 Hordeum vulgare MLOC_16981 I
MLOC_17928 Hordeum vulgare MLOC_17928 I
MLOC_52439 Hordeum vulgare MLOC_52439 I
MLOC_78504 Hordeum vulgare MLOC_78504 I
MTR_1g062940 Medicago truncatula MTR_1g062940 N
MTR_2g096380 Medicago truncatula MTR_2g096380 I
MTR_4g063100 Medicago truncatula MTR_4g063100 I
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.677
OB01G54920 Oryza brachyantha OB01G54920 I
OB05G11070 Oryza brachyantha OB05G11070 I
OB11G27690 Oryza brachyantha OB11G27690 I
OB12G23080 Oryza brachyantha OB12G23080 I
OBART01G45730 Oryza barthii OBART01G45730 I
OBART05G01080 Oryza barthii OBART05G01080 I
OBART12G16130 Oryza barthii OBART12G16130 N
OGLUM05G01090 Oryza glumaepatula OGLUM05G01090 I
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N
OLONG_004480 Oryza longistaminata OLONG_004480 I
OMERI05G01150 Oryza meridionalis OMERI05G01150 I
ONIVA05G01120 Oryza nivara ONIVA05G01120 I
OPUNC01G44650 Oryza punctata OPUNC01G44650 I
OPUNC05G00970 Oryza punctata OPUNC05G00970 I
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I
orange1.1g038824m.g Citrus sinensis orange1.1g038824m.g N
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I
ORGLA11G0187400 Oryza glaberrima ORGLA11G0187400 I
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I
ORUFI05G01110 Oryza rufipogon ORUFI05G01110 I
ORUFI11G25190 Oryza rufipogon ORUFI11G25190 I
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I
OS01G0975300 Oryza sativa OS01G0975300 N
MYBAS1 Oryza sativa OS11G0700500 I
MYBAS2 Oryza sativa OS12G0567300 I
Pavir.Ca00653 Panicum virgatum Pavir.Ca00653 I
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I
Pavir.Ga02684 Panicum virgatum Pavir.Ga02684 I
Pavir.Gb01276 Panicum virgatum Pavir.Gb01276 N
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I
Pavir.Ia02093 Panicum virgatum Pavir.Ia02093 N
Pavir.J04129 Panicum virgatum Pavir.J04129 I
Pavir.J08441 Panicum virgatum Pavir.J08441 I
Pavir.J11500 Panicum virgatum Pavir.J11500 I
Pavir.J23620 Panicum virgatum Pavir.J23620 N
Pavir.J24653 Panicum virgatum Pavir.J24653 N
Pavir.J33560 Panicum virgatum Pavir.J33560 I
Pavir.J36591 Panicum virgatum Pavir.J36591 I
PDK_20s1354851g002 Phoenix dactylifera PDK_20s1354851g002 N
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N
PDK_20s1675721g001 Phoenix dactylifera PDK_20s1675721g001 N
PK27824.1 Cannabis sativa PK27824.1 N
Pm000809 Prunus mume Pm000809 I
Pm005451 Prunus mume Pm005451 N
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I
SapurV1A.0004s0360 Salix purpurea SapurV1A.0004s0360 I
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I 0.664
Sb08g018580 Sorghum bicolor Sb08g018580 I
Sb09g001590 Sorghum bicolor Sb09g001590 I
Si003873m.g Setaria italica Si003873m.g N
Si022826m.g Setaria italica Si022826m.g I
Si023104m.g Setaria italica Si023104m.g I
Si024470m.g Setaria italica Si024470m.g I
Si026803m.g Setaria italica Si026803m.g I
Solyc06g005330.2 Solanum lycopersicum Solyc06g005330.2 I
TCM_005371 Theobroma cacao TCM_005371 I 0.769
TCM_021433 Theobroma cacao TCM_021433 I
TCM_041904 Theobroma cacao TCM_041904 I
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I
Thhalv10010915m.g Eutrema salsugineum Thhalv10010915m.g I
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I
Traes_1BS_B44ECE28C Triticum aestivum Traes_1BS_B44ECE28C I
Traes_1DS_47E2D90AC Triticum aestivum Traes_1DS_47E2D90AC I
Traes_1DS_47E2D90AC1 Triticum aestivum Traes_1DS_47E2D90AC1 I
Traes_2BL_DAA2104F5 Triticum aestivum Traes_2BL_DAA2104F5 N
Traes_2DL_304E62CCE Triticum aestivum Traes_2DL_304E62CCE N
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I
Traes_3DL_75F8A05CF Triticum aestivum Traes_3DL_75F8A05CF N
Traes_4AL_8B52D54FD Triticum aestivum Traes_4AL_8B52D54FD I
Traes_4BS_61B30E3E4 Triticum aestivum Traes_4BS_61B30E3E4 I
Traes_4DS_0ECE7A421 Triticum aestivum Traes_4DS_0ECE7A421 I
Traes_5AL_D1807A4E0 Triticum aestivum Traes_5AL_D1807A4E0 N
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N
TRIUR3_12300 Triticum urartu TRIUR3_12300 N
TRIUR3_16687 Triticum urartu TRIUR3_16687 I
TRIUR3_16862 Triticum urartu TRIUR3_16862 I
TRIUR3_22432 Triticum urartu TRIUR3_22432 I
TRIUR3_32110 Triticum urartu TRIUR3_32110 N
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I
AtMYB27 Vitis vinifera VIT_08s0007g04830 I