RUNX1 (Loxodonta africana)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSLAFG00000004290 T319402_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		1.000 1.000
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		1.000 1.000
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		1.000 1.000
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		1.000 1.000
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		1.000 1.000
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		1.000 1.000
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		1.000 1.000
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		1.000 1.000
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		1.000 1.000
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		1.000 1.000
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		1.000 1.000
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		1.000 1.000
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.931 0.931
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.931 0.931
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.931 0.931
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.931 0.931
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.931 0.931
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.931 0.931
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.931 0.931
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.931 0.931
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.931 0.931
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.931 0.931
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.931 0.931
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.931 0.931
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.923 0.923
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.923 0.923
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.923 0.923
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.923 0.923
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.923 0.923
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.923 0.923
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.923 0.923
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.923 0.923
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.923 0.923
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.923 0.923
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.923 0.923
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.923 0.923
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.731 0.731
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.731 0.731
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.731 0.731
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000003579 Runt 51 180

Links

Other Runt family TFs
Other Loxodonta africana TFs

328 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28952.m000016 Ricinus communis 28952.m000016 I 0.000
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I 0.000
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I 0.000
AtIDD16 Arabidopsis thaliana AT1G25250 I 0.000
IDD14 Arabidopsis thaliana AT1G68130 I 0.000
SGR5 Arabidopsis thaliana AT2G01940 D 0.000
BGIOSGA030871 Oryza indica BGIOSGA030871 I 0.000
Bo2g134790 Brassica oleracea Bo2g134790 I 0.000
Bo3g139880 Brassica oleracea Bo3g139880 I 0.000
Bo5g043540 Brassica oleracea Bo5g043540 I 0.000
Bo6g097320 Brassica oleracea Bo6g097320 I 0.000
Bo6g106560 Brassica oleracea Bo6g106560 I 0.000
Bo9g070370 Brassica oleracea Bo9g070370 I 0.000
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I 0.000
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I 0.000
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I 0.000
Bra004050 Brassica rapa Bra004050 I 0.000
Bra004283 Brassica rapa Bra004283 I 0.000
Bra010981 Brassica rapa Bra010981 I 0.000
Bra017432 Brassica rapa Bra017432 I 0.000
Bra024771 Brassica rapa Bra024771 I 0.000
Bra024841 Brassica rapa Bra024841 I 0.000
Bra026624 Brassica rapa Bra026624 I 0.000
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I 0.000
BRADI3G37890 Brachypodium distachyon BRADI3G37890 I 0.000
BRADI4G31770 Brachypodium distachyon BRADI4G31770 I 0.000
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I 0.000
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I 0.000
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I 0.000
Carubv10009424m.g Capsella rubella Carubv10009424m.g I 0.000
Carubv10017254m.g Capsella rubella Carubv10017254m.g I 0.000
Carubv10020337m.g Capsella rubella Carubv10020337m.g I 0.000
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I 0.000
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I 0.000
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I 0.000
Ca_05083 Cicer arietinum Ca_05083 I 0.000
Ca_22171 Cicer arietinum Ca_22171 I 0.000
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I 0.000
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I 0.000
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I 0.000
Cla005913 Citrullus lanatus Cla005913 I 0.000
Cla018945 Citrullus lanatus Cla018945 I 0.000
Cucsa.112090 Cucumis sativus Cucsa.112090 I 0.000
Cucsa.122150 Cucumis sativus Cucsa.122150 I 0.000
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I 0.000
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I 0.000
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I 0.000
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I 0.000
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I 0.000
F775_43255 Aegilops tauschii F775_43255 I 0.000
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I 0.000
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I 0.000
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I 0.000
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I 0.000
GLYMA05G26780 Glycine max GLYMA05G26780 I 0.000
GLYMA05G33590 Glycine max GLYMA05G33590 I 0.000
GLYMA07G12170 Glycine max GLYMA07G12170 I 0.000
GLYMA08G06130 Glycine max GLYMA08G06130 I 0.000
GLYMA08G09760 Glycine max GLYMA08G09760 I 0.000
GLYMA09G30030 Glycine max GLYMA09G30030 I 0.000
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I 0.000
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I 0.000
Gorai.005G154300 Gossypium raimondii Gorai.005G154300 I 0.000
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I 0.000
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I 0.000
Gorai.008G169500 Gossypium raimondii Gorai.008G169500 I 0.000
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I 0.000
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I 0.000
GRMZM2G074032 Zea mays GRMZM2G074032 I 0.000
GRMZM2G110107 Zea mays GRMZM2G110107 I 0.000
GRMZM2G123094 Zea mays GRMZM2G123094 I 0.000
GRMZM2G141031 Zea mays GRMZM2G141031 I 0.000
GRMZM2G465595 Zea mays GRMZM2G465595 I 0.000
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I 0.000
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I 0.000
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I 0.000
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I 0.000
LPERR03G08760 Leersia perrieri LPERR03G08760 I 0.000
LPERR08G14510 Leersia perrieri LPERR08G14510 I 0.000
LPERR09G08790 Leersia perrieri LPERR09G08790 I 0.000
Lus10026369.g Linum usitatissimum Lus10026369.g I 0.000
Lus10031314.g Linum usitatissimum Lus10031314.g I 0.000
Lus10031882.g Linum usitatissimum Lus10031882.g I 0.000
mgf008235m Mimulus guttatus mgf008235m I 0.000
MLOC_57613 Hordeum vulgare MLOC_57613 I 0.000
OB09G18760 Oryza brachyantha OB09G18760 I 0.000
OBART08G17550 Oryza barthii OBART08G17550 I 0.000
OBART09G12250 Oryza barthii OBART09G12250 I 0.000
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I 0.000
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I 0.000
OGLUM09G12720 Oryza glumaepatula OGLUM09G12720 I 0.000
OMERI03G09110 Oryza meridionalis OMERI03G09110 I 0.000
OMERI08G14120 Oryza meridionalis OMERI08G14120 I 0.000
OMERI09G13410 Oryza meridionalis OMERI09G13410 I 0.000
ONIVA03G10380 Oryza nivara ONIVA03G10380 I 0.000
ONIVA08G19430 Oryza nivara ONIVA08G19430 I 0.000
ONIVA09G13010 Oryza nivara ONIVA09G13010 I 0.000
OPUNC03G09440 Oryza punctata OPUNC03G09440 I 0.000
OPUNC08G15410 Oryza punctata OPUNC08G15410 I 0.000
OPUNC09G10740 Oryza punctata OPUNC09G10740 I 0.000
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I 0.000
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I 0.000
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I 0.000
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I 0.000
ORGLA09G0092400 Oryza glaberrima ORGLA09G0092400 I 0.000
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I 0.000
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I 0.000
ORUFI09G13180 Oryza rufipogon ORUFI09G13180 I 0.000
OS03G0237250 Oryza sativa OS03G0237250 I 0.000
OS08G0467100 Oryza sativa OS08G0467100 I 0.000
Pavir.Ba02057 Panicum virgatum Pavir.Ba02057 I 0.000
Pavir.Fa00691 Panicum virgatum Pavir.Fa00691 I 0.000
Pavir.Fb01741 Panicum virgatum Pavir.Fb01741 I 0.000
Pavir.J12350 Panicum virgatum Pavir.J12350 I 0.000
Pavir.J40191 Panicum virgatum Pavir.J40191 I 0.000
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I 0.000
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I 0.000
PK17145.1 Cannabis sativa PK17145.1 I 0.000
PK25720.1 Cannabis sativa PK25720.1 I 0.000
Pm005926 Prunus mume Pm005926 I 0.000
Pm025274 Prunus mume Pm025274 I 0.000
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I 0.000
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I 0.000
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I 0.000
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I 0.000
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I 0.000
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I 0.000
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I 0.000
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I 0.000
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I 0.000
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I 0.000
Sb02g026230 Sorghum bicolor Sb02g026230 I 0.000
Sb07g022700 Sorghum bicolor Sb07g022700 I 0.000
Si029726m.g Setaria italica Si029726m.g I 0.000
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I 0.000
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I 0.000
TCM_011210 Theobroma cacao TCM_011210 I 0.000
TCM_039880 Theobroma cacao TCM_039880 I 0.000
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I 0.000
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I 0.000
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I 0.000
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I 0.000
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I 0.000
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I 0.000