Gfo_R011596 (Geospiza fortis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Gfo_R011596 T319662_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.926 0.926
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.926 0.926
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.926 0.926
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.926 0.926
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.926 0.926
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.926 0.926
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.926 0.926
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.926 0.926
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.926 0.926
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.926 0.926
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.926 0.926
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.926 0.926
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.909 0.909
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.909 0.909
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.909 0.909
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.909 0.909
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.909 0.909
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.909 0.909
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.909 0.909
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.909 0.909
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.909 0.909
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.909 0.909
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.909 0.909
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.909 0.909
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.868 0.868
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.868 0.868
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.868 0.868
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.868 0.868
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.868 0.868
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.868 0.868
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.868 0.868
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.868 0.868
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.868 0.868
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.868 0.868
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.868 0.868
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.868 0.868
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.711 0.711
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.711 0.711
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.711 0.711
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R011596 Runt 28 148

Links

Other Runt family TFs
Other Geospiza fortis TFs

267 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28952.m000016 Ricinus communis 28952.m000016 I
AMTR_s00024p00098860 Amborella trichopoda AMTR_s00024p00098860 I
Aquca_002_01252 Aquilegia coerulea Aquca_002_01252 I
AtIDD16 Arabidopsis thaliana AT1G25250 I
IDD14 Arabidopsis thaliana AT1G68130 I
BGIOSGA011151 Oryza indica BGIOSGA011151 I
BGIOSGA030871 Oryza indica BGIOSGA030871 I
Bo2g134790 Brassica oleracea Bo2g134790 I
Bo3g139880 Brassica oleracea Bo3g139880 I
Bo5g043540 Brassica oleracea Bo5g043540 I
Bo6g097320 Brassica oleracea Bo6g097320 I
Bo6g106560 Brassica oleracea Bo6g106560 I
Bo9g070370 Brassica oleracea Bo9g070370 I
Bostr.0556s0022 Boechera stricta Bostr.0556s0022 I
Bostr.15697s0010 Boechera stricta Bostr.15697s0010 I
Bostr.26959s0085 Boechera stricta Bostr.26959s0085 I
Bra004050 Brassica rapa Bra004050 I
Bra004283 Brassica rapa Bra004283 I
Bra010981 Brassica rapa Bra010981 I
Bra017432 Brassica rapa Bra017432 I
Bra024771 Brassica rapa Bra024771 I
Bra024841 Brassica rapa Bra024841 I
Bra026624 Brassica rapa Bra026624 I
BRADI1G68730 Brachypodium distachyon BRADI1G68730 I
BRADI3G37890 Brachypodium distachyon BRADI3G37890 I
BRADI4G31770 Brachypodium distachyon BRADI4G31770 I
Cagra.1111s0006 Capsella grandiflora Cagra.1111s0006 I
Cagra.2231s0014 Capsella grandiflora Cagra.2231s0014 I
Cagra.3834s0006 Capsella grandiflora Cagra.3834s0006 I
Carubv10009424m.g Capsella rubella Carubv10009424m.g I
Carubv10017254m.g Capsella rubella Carubv10017254m.g I
Carubv10020337m.g Capsella rubella Carubv10020337m.g I
cassava18079.valid.m1 Manihot esculenta cassava18079.valid.m1 I
cassava1947.valid.m1 Manihot esculenta cassava1947.valid.m1 I
cassava36596.valid.m1 Manihot esculenta cassava36596.valid.m1 I
Ca_05083 Cicer arietinum Ca_05083 I
Ca_22171 Cicer arietinum Ca_22171 I
chr4.CM0387.280.nc Lotus japonicus chr4.CM0387.280.nc I
Ciclev10015315m.g Citrus clementina Ciclev10015315m.g I
Ciclev10020125m.g Citrus clementina Ciclev10020125m.g I
Cla005913 Citrullus lanatus Cla005913 I
Cla018945 Citrullus lanatus Cla018945 I
Cucsa.112090 Cucumis sativus Cucsa.112090 I
Cucsa.122150 Cucumis sativus Cucsa.122150 I
Eucgr.G02066 Eucalyptus grandis Eucgr.G02066 I
Eucgr.H00574 Eucalyptus grandis Eucgr.H00574 I
Eucgr.K02292 Eucalyptus grandis Eucgr.K02292 I
evm.TU.supercontig_2.118 Carica papaya evm.TU.supercontig_2.118 I
evm.TU.supercontig_7.131 Carica papaya evm.TU.supercontig_7.131 I
F775_43255 Aegilops tauschii F775_43255 I
AtIDD14 Arabidopsis lyrata fgenesh2_kg.2__1036__AT1G68130.1 I
SGR5 Arabidopsis lyrata fgenesh2_kg.5__108__AT2G01940.1 I
gene00618-v1.0-hybrid Fragaria vesca gene00618-v1.0-hybrid I
gene09325-v1.0-hybrid Fragaria vesca gene09325-v1.0-hybrid I
GLYMA05G26780 Glycine max GLYMA05G26780 I
GLYMA05G33590 Glycine max GLYMA05G33590 I
GLYMA07G12170 Glycine max GLYMA07G12170 I
GLYMA08G06130 Glycine max GLYMA08G06130 I
GLYMA08G09760 Glycine max GLYMA08G09760 I
GLYMA09G30030 Glycine max GLYMA09G30030 I
Gorai.002G171100 Gossypium raimondii Gorai.002G171100 I
Gorai.005G134600 Gossypium raimondii Gorai.005G134600 I
Gorai.005G154300 Gossypium raimondii Gorai.005G154300 I
Gorai.006G190500 Gossypium raimondii Gorai.006G190500 I
Gorai.007G002600 Gossypium raimondii Gorai.007G002600 I
Gorai.008G169500 Gossypium raimondii Gorai.008G169500 I
Gorai.008G293000 Gossypium raimondii Gorai.008G293000 I
Gorai.009G329200 Gossypium raimondii Gorai.009G329200 I
GRMZM2G074032 Zea mays GRMZM2G074032 I
GRMZM2G110107 Zea mays GRMZM2G110107 I
GRMZM2G123094 Zea mays GRMZM2G123094 I
GRMZM2G141031 Zea mays GRMZM2G141031 I
GRMZM2G465595 Zea mays GRMZM2G465595 I
GSMUA_Achr10G29940_001 Musa acuminata GSMUA_Achr10G29940_001 I
GSMUA_Achr5G23130_001 Musa acuminata GSMUA_Achr5G23130_001 I
GSMUA_Achr6G02490_001 Musa acuminata GSMUA_Achr6G02490_001 I
GSMUA_Achr7G18610_001 Musa acuminata GSMUA_Achr7G18610_001 I
LPERR03G08760 Leersia perrieri LPERR03G08760 I
LPERR08G14510 Leersia perrieri LPERR08G14510 I
LPERR09G08790 Leersia perrieri LPERR09G08790 I
Lus10026369.g Linum usitatissimum Lus10026369.g I
Lus10031314.g Linum usitatissimum Lus10031314.g I
Lus10031882.g Linum usitatissimum Lus10031882.g I
mgf008235m Mimulus guttatus mgf008235m I
MLOC_57613 Hordeum vulgare MLOC_57613 I
OB09G18760 Oryza brachyantha OB09G18760 I
OBART08G17550 Oryza barthii OBART08G17550 I
OBART09G12250 Oryza barthii OBART09G12250 I
OGLUM03G09920 Oryza glumaepatula OGLUM03G09920 I
OGLUM08G18370 Oryza glumaepatula OGLUM08G18370 I
OGLUM09G12720 Oryza glumaepatula OGLUM09G12720 I
OMERI03G09110 Oryza meridionalis OMERI03G09110 I
OMERI08G14120 Oryza meridionalis OMERI08G14120 I
OMERI09G13410 Oryza meridionalis OMERI09G13410 I
ONIVA03G10380 Oryza nivara ONIVA03G10380 I
ONIVA08G19430 Oryza nivara ONIVA08G19430 I
ONIVA09G13010 Oryza nivara ONIVA09G13010 I
OPUNC03G09440 Oryza punctata OPUNC03G09440 I
OPUNC08G15410 Oryza punctata OPUNC08G15410 I
OPUNC09G10740 Oryza punctata OPUNC09G10740 I
orange1.1g014184m.g Citrus sinensis orange1.1g014184m.g I
orange1.1g037502m.g Citrus sinensis orange1.1g037502m.g I
ORGLA03G0094200 Oryza glaberrima ORGLA03G0094200 I
ORGLA08G0153600 Oryza glaberrima ORGLA08G0153600 I
ORGLA09G0092400 Oryza glaberrima ORGLA09G0092400 I
ORGLA09G0169200 Oryza glaberrima ORGLA09G0169200 I
ORUFI03G10000 Oryza rufipogon ORUFI03G10000 I
ORUFI09G13180 Oryza rufipogon ORUFI09G13180 I
OS03G0237250 Oryza sativa OS03G0237250 I
OS08G0467100 Oryza sativa OS08G0467100 I
Pavir.Ba02057 Panicum virgatum Pavir.Ba02057 I
Pavir.Fa00691 Panicum virgatum Pavir.Fa00691 I
Pavir.Fb01741 Panicum virgatum Pavir.Fb01741 I
Pavir.J12350 Panicum virgatum Pavir.J12350 I
Pavir.J40191 Panicum virgatum Pavir.J40191 I
PGSC0003DMG400026959 Solanum tuberosum PGSC0003DMG400026959 I
PGSC0003DMG400031049 Solanum tuberosum PGSC0003DMG400031049 I
PK17145.1 Cannabis sativa PK17145.1 I
PK25720.1 Cannabis sativa PK25720.1 I
Pm005926 Prunus mume Pm005926 I
Pm025274 Prunus mume Pm025274 I
POPTR_0008s13980 Populus trichocarpa POPTR_0008s13980 I
POPTR_0010s11160 Populus trichocarpa POPTR_0010s11160 I
POPTR_0012s03730 Populus trichocarpa POPTR_0012s03730 I
POPTR_0015s05180 Populus trichocarpa POPTR_0015s05180 I
PRUPE_ppa004447mg Prunus persica PRUPE_ppa004447mg I
PRUPE_ppa005331mg Prunus persica PRUPE_ppa005331mg I
SapurV1A.0015s0850 Salix purpurea SapurV1A.0015s0850 I
SapurV1A.0055s0020 Salix purpurea SapurV1A.0055s0020 I
SapurV1A.0074s0350 Salix purpurea SapurV1A.0074s0350 I
SapurV1A.1169s0070 Salix purpurea SapurV1A.1169s0070 I
Sb02g026230 Sorghum bicolor Sb02g026230 I
Sb07g022700 Sorghum bicolor Sb07g022700 I
Si029726m.g Setaria italica Si029726m.g I
Solyc01g005060.2 Solanum lycopersicum Solyc01g005060.2 I
Solyc06g072360.2 Solanum lycopersicum Solyc06g072360.2 I
TCM_011210 Theobroma cacao TCM_011210 I
TCM_039880 Theobroma cacao TCM_039880 I
Thhalv10004221m.g Eutrema salsugineum Thhalv10004221m.g I
Thhalv10009376m.g Eutrema salsugineum Thhalv10009376m.g I
Thhalv10018614m.g Eutrema salsugineum Thhalv10018614m.g I
Traes_4AS_2718699A7 Triticum aestivum Traes_4AS_2718699A7 I
VIT_01s0011g06400 Vitis vinifera VIT_01s0011g06400 I
VIT_17s0000g01870 Vitis vinifera VIT_17s0000g01870 I