CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SNAPOd2T00000189001 *(Oikopleura dioica)* Runt
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00853 (Runt)	IPR013524	SNAPOd2T00000189001	T319704_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Runx1 M08163_2.00	Mus musculus	HRRCCACARVN	NBYTGTGGYYD	ChIP-seq Mathelier et al.(2014) MA0002.2	0.767	0.767
RUNX1 M09371_2.00	Homo sapiens	NWAACCACARV	BYTGTGGTTWN	Misc Kulakovskiy et al.(2013) RUNX1_HUMAN.H11MO.0.A	0.767	0.767
Runx1 M09372_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX1_MOUSE.H11MO.0.A	0.767	0.767
RUNX1 M09632_2.00	Homo sapiens	HAACCACADV	BHTGTGGTTD	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE29180	0.767	0.767
RUNX1 M09631_2.00	Homo sapiens	VCCACWTCCTBY	RVAGGAWGTGGB	Misc Heinz et al.(2010) Jurkat-RUNX1_GSE17954	0.767	0.767
Runx1 M09633_2.00	Mus musculus	NWAACCACAR	YTGTGGTTWN	Misc Heinz et al.(2010) HPC7-Runx1_GSE22178	0.767	0.767
RUNX1 M11258_2.00	Homo sapiens	ACCRCA	TGYGGT	Transfac Matys et al.(2006) V$AML1_01	0.767	0.767
RUNX1 M11259_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_01	0.767	0.767
RUNX1 M11260_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4_02	0.767	0.767
RUNX1 M11261_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q4	0.767	0.767
RUNX1 M11262_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q5	0.767	0.767
RUNX1 M11263_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML1_Q6	0.767	0.767
Runx2 M01307_2.00	Mus musculus	NHDACCRCAN	NTGYGGTHDN	PBM Lambert et al.(2019) pTH9764	0.733	0.733
RUNX2 M03468_2.00	Homo sapiens	HRACCGCAAACCRCRD	HYGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX2_1	0.733	0.733
RUNX2 M03469_2.00	Homo sapiens	HRACCRCADWWACCRCAD	HTGYGGTWWHTGYGGTYD	SELEX Jolma et al.(2013) RUNX2_2	0.733	0.733
RUNX2 M03470_2.00	Homo sapiens	WAACCRCAR	YTGYGGTTW	SELEX Jolma et al.(2013) RUNX2_3	0.733	0.733
RUNX2 M05733_2.00	Homo sapiens	NHRACCRCADWAACCRCAVN	NBTGYGGTTWHTGYGGTYDN	SELEX Yin et al.(2017) RUNX2_eDBD_HT-SELEX	0.733	0.733
RUNX2 M09370_2.00	Homo sapiens	MMHAACCACAVVMH	DKBBTGTGGTTDKK	Misc Kulakovskiy et al.(2013) RUNX2_HUMAN.H11MO.0.A	0.733	0.733
Runx2 M09373_2.00	Mus musculus	VWRACCACARVV	BBYTGTGGTYWB	Misc Kulakovskiy et al.(2013) RUNX2_MOUSE.H11MO.0.A	0.733	0.733
RUNX2 M09630_2.00	Homo sapiens	NHVACCACANNN	NNNTGTGGTBDN	Misc Heinz et al.(2010) PCa-RUNX2_GSE33889	0.733	0.733
RUNX2 M11255_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q3	0.733	0.733
RUNX2 M11256_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML3_Q6	0.733	0.733
RUNX2 M11257_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$OSF2_Q6	0.733	0.733
RUNX2 M05734_2.00	Homo sapiens	NWAACCACRAAAACCACRRN	NYYGTGGTTTTYGTGGTTWN	SELEX Yin et al.(2017) RUNX2_eDBD_Methyl-HT-SELEX	0.733	0.733
RUNX3 M03464_2.00	Homo sapiens	HRACCGCAAACCRCAN	NTGYGGTTTGCGGTYD	SELEX Jolma et al.(2013) RUNX3_1	0.700	0.700
RUNX3 M03465_2.00	Homo sapiens	WAACCRCARN	NYTGYGGTTW	SELEX Jolma et al.(2013) RUNX3_2	0.700	0.700
RUNX3 M03466_2.00	Homo sapiens	HDACCRCADWAACCRCRN	NYGYGGTTWHTGYGGTHD	SELEX Jolma et al.(2013) RUNX3_3	0.700	0.700
RUNX3 M03467_2.00	Homo sapiens	HRACCRCAAH	DTTGYGGTYD	SELEX Jolma et al.(2013) RUNX3_4	0.700	0.700
RUNX3 M02751_2.00	Homo sapiens	WACCRCAM	KTGYGGTW	SELEX Jolma et al.(2010) RUNX3_monomer	0.700	0.700
lz M03964_2.00	Drosophila melanogaster	HRACCGCAAHM	KDTTGCGGTYD	SELEX Nitta et al.(2015) lz_1	0.700	0.700
lz M03965_2.00	Drosophila melanogaster	HVACCRCARWAACCRCAV	BTGYGGTTWYTGYGGTBD	SELEX Nitta et al.(2015) lz_2	0.700	0.700
lz M03966_2.00	Drosophila melanogaster	WRACCRCAWTAACCRCAA	TTGYGGTTAWTGYGGTYW	SELEX Nitta et al.(2015) lz_3	0.700	0.700
lz M03967_2.00	Drosophila melanogaster	HRACCGCAAAACCRCAR	YTGYGGTTTTGCGGTYD	SELEX Nitta et al.(2015) lz_4	0.700	0.700
RUNX3 M05731_2.00	Homo sapiens	YWAACCGCAAAAACCGCARV	BYTGCGGTTTTTGCGGTTWR	SELEX Yin et al.(2017) RUNX3_FL_HT-SELEX	0.700	0.700
RUNX3 M09369_2.00	Homo sapiens	HAACCACARN	NYTGTGGTTD	Misc Kulakovskiy et al.(2013) RUNX3_HUMAN.H11MO.0.A	0.700	0.700
Runx3 M09374_2.00	Mus musculus	NHRACCACARVN	NBYTGTGGTYDN	Misc Kulakovskiy et al.(2013) RUNX3_MOUSE.H11MO.0.A	0.700	0.700
RUNX3 M11252_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3_01	0.700	0.700
RUNX3 M11253_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q3	0.700	0.700
RUNX3 M11254_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$AML2_Q4	0.700	0.700
RUNX3 M05732_2.00	Homo sapiens	HWAACCACRAAAACCACRARN	NYTYGTGGTTTTYGTGGTTWD	SELEX Yin et al.(2017) RUNX3_FL_Methyl-HT-SELEX	0.700	0.700
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
SNAPOd2T00000189001	Runt	1	30	MVATNPPQIAVYHRAIKITVDGPREPRSEY

Links
Other Runt family TFs
Other *Oikopleura dioica* TFs

31 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AMTR_s00004p00169140	Amborella trichopoda	AMTR_s00004p00169140	N
Aquca_020_00103	Aquilegia coerulea	Aquca_020_00103	N
MBD10	Arabidopsis thaliana	AT1G15340	N
Bo8g066360	Brassica oleracea	Bo8g066360	N
Bostr.7128s0147	Boechera stricta	Bostr.7128s0147	N
Bra016665	Brassica rapa	Bra016665	N
Bra021136	Brassica rapa	Bra021136	N
Cagra.2238s0088	Capsella grandiflora	Cagra.2238s0088	N
Carubv10009517m.g	Capsella rubella	Carubv10009517m.g	N
cassava13512.valid.m1	Manihot esculenta	cassava13512.valid.m1	N
cassava13513.valid.m1	Manihot esculenta	cassava13513.valid.m1	N
cassava6704.valid.m1	Manihot esculenta	cassava6704.valid.m1	N
Ca_19192	Cicer arietinum	Ca_19192	N
chr3.CM0142.530.nd	Lotus japonicus	chr3.CM0142.530.nd	N
chr4.CM0234.40.nc	Lotus japonicus	chr4.CM0234.40.nc	N
Ciclev10010753m.g	Citrus clementina	Ciclev10010753m.g	N
Cla012920	Citrullus lanatus	Cla012920	N
Cla016961	Citrullus lanatus	Cla016961	N
Cucsa.096390	Cucumis sativus	Cucsa.096390	N
Cucsa.132180	Cucumis sativus	Cucsa.132180	N
MBD10	Arabidopsis lyrata	fgenesh1_pm.C_scaffold_1001305	N
gene31058-v1.0-hybrid	Fragaria vesca	gene31058-v1.0-hybrid	N
GLYMA04G23780	Glycine max	GLYMA04G23780	N
GLYMA04G23980	Glycine max	GLYMA04G23980	N
GLYMA06G25310	Glycine max	GLYMA06G25310	N
GLYMA06G30350	Glycine max	GLYMA06G30350	N
GLYMA06G30590	Glycine max	GLYMA06G30590	N
GLYMA13G44230	Glycine max	GLYMA13G44230	N
GLYMA15G01040	Glycine max	GLYMA15G01040	N
Gorai.009G016600	Gossypium raimondii	Gorai.009G016600	N
Gorai.010G062800	Gossypium raimondii	Gorai.010G062800	N
Gorai.011G083900	Gossypium raimondii	Gorai.011G083900	N
Lus10019406.g	Linum usitatissimum	Lus10019406.g	N
MDP0000152128	Malus domestica	MDP0000152128	N
MDP0000248422	Malus domestica	MDP0000248422	N
MDP0000375866	Malus domestica	MDP0000375866	N
MDP0000574053	Malus domestica	MDP0000574053	N
MTR_0339s0020	Medicago truncatula	MTR_0339s0020	N
MTR_4g114770	Medicago truncatula	MTR_4g114770	N
MTR_4g114785	Medicago truncatula	MTR_4g114785	N
orange1.1g022412m.g	Citrus sinensis	orange1.1g022412m.g	N
PGSC0003DMG400002913	Solanum tuberosum	PGSC0003DMG400002913	N
PK04144.1	Cannabis sativa	PK04144.1	N
Pm027560	Prunus mume	Pm027560	N
POPTR_0018s12980	Populus trichocarpa	POPTR_0018s12980	N
PRUPE_ppa008789mg	Prunus persica	PRUPE_ppa008789mg	N
PRUPE_ppa009989mg	Prunus persica	PRUPE_ppa009989mg	N
SapurV1A.0034s0480	Salix purpurea	SapurV1A.0034s0480	N
SapurV1A.1100s0070	Salix purpurea	SapurV1A.1100s0070	N
Solyc07g008170.2	Solanum lycopersicum	Solyc07g008170.2	N
Solyc12g009590.1	Solanum lycopersicum	Solyc12g009590.1	N
TCM_027169	Theobroma cacao	TCM_027169	N
TCM_038107	Theobroma cacao	TCM_038107	N
Thhalv10007967m.g	Eutrema salsugineum	Thhalv10007967m.g	N
VIT_09s0002g06870	Vitis vinifera	VIT_09s0002g06870	N
VIT_11s0016g05580	Vitis vinifera	VIT_11s0016g05580	N

SNAPOd2T00000189001 (Oikopleura dioica) Runt

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

31 Related TFs

SNAPOd2T00000189001 **(Oikopleura dioica)
Runt**