POPTR_0018s14680 (Populus trichocarpa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 POPTR_0018s14680 T322971_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s14680.1 SBP 172 246
POPTR_0018s14680.2 SBP 172 246
POPTR_0018s14680.3 SBP 172 246

Links

Other SBP family TFs
Other Populus trichocarpa TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004641 Ricinus communis 29929.m004641 I 0.920
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.939
SPL2 Arabidopsis thaliana AT5G43270 N 0.912
Bo2g062840 Brassica oleracea Bo2g062840 I 0.888
Bo7g065290 Brassica oleracea Bo7g065290 N 0.915
Bo9g058970 Brassica oleracea Bo9g058970 N 0.912
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.886
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.897
Bra027478 Brassica rapa Bra027478 N 0.912
Bra033671 Brassica rapa Bra033671 N 0.912
Bra038324 Brassica rapa Bra038324 I 0.891
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.890
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.909
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.909
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.927
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.929
Ca_11356 Cicer arietinum Ca_11356 I 0.920
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.931
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.912
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.955
GLYMA18G00903 Glycine max GLYMA18G00903 N 0.920
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.930
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.906
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.906
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.899
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.921
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.921
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.897
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.910
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.915
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.919
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.956
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.931
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.976
MDP0000155354 Malus domestica MDP0000155354 N 0.933
mgf010397m Mimulus guttatus mgf010397m N 0.893
mgf019346m Mimulus guttatus mgf019346m I 0.894
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.893
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.958
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.931
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.897
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.897
PK16953.1 Cannabis sativa PK16953.1 N 0.940
Pm007020 Prunus mume Pm007020 N 0.933
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.916
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.916
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.935
SapurV1A.0001s2320 Salix purpurea SapurV1A.0001s2320 N 0.921
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.916
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.986
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.916
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.906
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.912
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.938
TCM_008772 Theobroma cacao TCM_008772 N 0.940
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.912
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.920
SPL2 Vitis vinifera VIT_11s0065g00170 N 0.975