BRADI3G09690 (Brachypodium distachyon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BRADI3G09690 T326729_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.465 0.604
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.465 0.604
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G09690.1 Sox 209 274
BRADI3G09690.1 Sox 329 395
BRADI3G09690.1 Sox 454 522

Links

Other Sox family TFs
Other Brachypodium distachyon TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00013p00252260 Amborella trichopoda AMTR_s00013p00252260 N 0.000
AT4G13040 Arabidopsis thaliana AT4G13040 N 0.000
BGIOSGA008254 Oryza indica BGIOSGA008254 N 0.000
Bo11579s010 Brassica oleracea Bo11579s010 N 0.000
Bo8g033910 Brassica oleracea Bo8g033910 N 0.000
Bostr.2021s0045 Boechera stricta Bostr.2021s0045 N 0.000
Bra034895 Brassica rapa Bra034895 N 0.000
BRADI3G43822 Brachypodium distachyon BRADI3G43822 N 0.000
Cagra.2997s0002 Capsella grandiflora Cagra.2997s0002 N 0.000
Carubv10005663m.g Capsella rubella Carubv10005663m.g N 0.000
cassava38073.valid.m1 Manihot esculenta cassava38073.valid.m1 N 0.000
cassava6828.valid.m1 Manihot esculenta cassava6828.valid.m1 N 0.000
Ca_11707 Cicer arietinum Ca_11707 N 0.000
Ca_17230 Cicer arietinum Ca_17230 N 0.000
chr1.LjT46N10.100.nd Lotus japonicus chr1.LjT46N10.100.nd N 0.000
chr3.CM0423.200.nd Lotus japonicus chr3.CM0423.200.nd N 0.000
Ciclev10021891m.g Citrus clementina Ciclev10021891m.g N 0.000
Cla002744 Citrullus lanatus Cla002744 N 0.000
Cucsa.150110 Cucumis sativus Cucsa.150110 N 0.000
evm.TU.supercontig_21.106 Carica papaya evm.TU.supercontig_21.106 N 0.000
e_gw1.317.27.1 Physcomitrella patens e_gw1.317.27.1 N 0.000
GLYMA08G46250 Glycine max GLYMA08G46250 N 0.000
GLYMA18G33460 Glycine max GLYMA18G33460 N 0.000
Gorai.001G105100 Gossypium raimondii Gorai.001G105100 N 0.000
Gorai.001G188300 Gossypium raimondii Gorai.001G188300 N 0.000
Gorai.001G231300 Gossypium raimondii Gorai.001G231300 N 0.000
Gorai.007G156300 Gossypium raimondii Gorai.007G156300 N 0.000
GSMUA_Achr6G06510_001 Musa acuminata GSMUA_Achr6G06510_001 N 0.000
GSMUA_Achr9G01590_001 Musa acuminata GSMUA_Achr9G01590_001 N 0.000
LPERR02G13930 Leersia perrieri LPERR02G13930 N 0.000
Lus10011836.g Linum usitatissimum Lus10011836.g N 0.000
Lus10022769.g Linum usitatissimum Lus10022769.g N 0.000
MDP0000129941 Malus domestica MDP0000129941 N 0.000
MDP0000300382 Malus domestica MDP0000300382 N 0.000
MDP0000675982 Malus domestica MDP0000675982 N 0.000
mgf003491m Mimulus guttatus mgf003491m N 0.000
mgf007349m Mimulus guttatus mgf007349m N 0.000
MTR_7g055857 Medicago truncatula MTR_7g055857 N 0.000
MTR_8g012655 Medicago truncatula MTR_8g012655 N 0.000
OB02G25330 Oryza brachyantha OB02G25330 N 0.000
OBART02G17450 Oryza barthii OBART02G17450 N 0.000
OGLUM02G17700 Oryza glumaepatula OGLUM02G17700 N 0.000
OLONG_009588 Oryza longistaminata OLONG_009588 N 0.000
ONIVA02G18870 Oryza nivara ONIVA02G18870 N 0.000
OPUNC02G15530 Oryza punctata OPUNC02G15530 N 0.000
orange1.1g025914m.g Citrus sinensis orange1.1g025914m.g N 0.000
ORGLA02G0152600 Oryza glaberrima ORGLA02G0152600 N 0.000
ORUFI02G18290 Oryza rufipogon ORUFI02G18290 N 0.000
OS02G0499000 Oryza sativa OS02G0499000 N 0.000
Pavir.Aa01947 Panicum virgatum Pavir.Aa01947 N 0.000
Pavir.J28064 Panicum virgatum Pavir.J28064 N 0.000
PGSC0003DMG400017485 Solanum tuberosum PGSC0003DMG400017485 N 0.000
PK01824.1 Cannabis sativa PK01824.1 N 0.000
Pm020315 Prunus mume Pm020315 N 0.000
POPTR_0002s24750 Populus trichocarpa POPTR_0002s24750 N 0.000
PRUPE_ppa011812mg Prunus persica PRUPE_ppa011812mg N 0.000
Sb04g020150 Sorghum bicolor Sb04g020150 N 0.000
SELMODRAFT_420254 Selaginella moellendorffii SELMODRAFT_420254 N 0.000
SELMODRAFT_443366 Selaginella moellendorffii SELMODRAFT_443366 N 0.000
Si018306m.g Setaria italica Si018306m.g N 0.000
Solyc09g059510.2 Solanum lycopersicum Solyc09g059510.2 N 0.000
TCM_002835 Theobroma cacao TCM_002835 N 0.000
Thhalv10026242m.g Eutrema salsugineum Thhalv10026242m.g N 0.000
Traes_6AL_13895C140 Triticum aestivum Traes_6AL_13895C140 N 0.000
Traes_6DS_43372C0A6 Triticum aestivum Traes_6DS_43372C0A6 N 0.000
VIT_00s0184g00010 Vitis vinifera VIT_00s0184g00010 N 0.000