SOX2 (Procavia capensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSPCAG00000003690 T328839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SOX2
M03519_2.00 		Homo sapiens
DAACAATGKYAKTGTTN
NAACAMTRMCATTGTTH		 SELEX
Jolma et al.(2013)
SOX2_1 		0.284 1.000
SOX2
M03520_2.00 		Homo sapiens
VTGAATGDYATTCAN
NTGAATRHCATTCAB		 SELEX
Jolma et al.(2013)
SOX2_2 		0.284 1.000
SOX2
M03521_2.00 		Homo sapiens
NATCAATGNYATTGAWD
HWTCAATRNCATTGATN		 SELEX
Jolma et al.(2013)
SOX2_3 		0.284 1.000
SOX2
M03522_2.00 		Homo sapiens
NAACAATANCATTGTTH
DAACAATGNTATTGTTN		 SELEX
Jolma et al.(2013)
SOX2_4 		0.284 1.000
SOX2
M03523_2.00 		Homo sapiens
HATCAATANCATTGATH
DATCAATGNTATTGATD		 SELEX
Jolma et al.(2013)
SOX2_5 		0.284 1.000
SOX2
M03524_2.00 		Homo sapiens
DTGAATWNCATTCAH
DTGAATGNWATTCAH		 SELEX
Jolma et al.(2013)
SOX2_6 		0.284 1.000
SOX2
M05897_2.00 		Homo sapiens
NACAAWRRNN
NNYYWTTGTN		 SMiLE-seq
Isakova et al.(2017)
SOX2 		0.284 1.000
Sox2
M08170_2.00 		Mus musculus
CCWTTGTB
VACAAWGG		 ChIP-seq
Mathelier et al.(2014)
MA0143.3 		0.284 1.000
Sox2
M08041_2.00 		Mus musculus
WHWRMADNACAAWRR
YYWTTGTNHTKYWDW		 ChIP-seq
Chen et al.(2011)
SRP000217_Sox2 		0.284 1.000
Sox2
M08042_2.00 		Mus musculus
TTWRCATNWSAAWRV
BYWTTSWNATGYWAA		 ChIP-seq
Chen et al.(2011)
SRP000712_Sox2 		0.284 1.000
SOX2
M09397_2.00 		Homo sapiens
BBYYWTTGTBYBB
VVRVACAAWRRVV		 Misc
Kulakovskiy et al.(2013)
SOX2_HUMAN.H11MO.0.A 		0.284 1.000
Sox2
M09409_2.00 		Mus musculus
THWRCATNACAAWRRV
BYYWTTGTNATGYWDA		 Misc
Kulakovskiy et al.(2013)
SOX2_MOUSE.H11MO.0.A 		0.284 1.000
SOX2
M11327_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX2_Q3_01 		0.284 1.000
SOX2
M11328_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX2_Q3 		0.284 1.000
SOX2
M11329_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX2_Q4 		0.284 1.000
SOX2
M11330_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX2_Q6 		0.284 1.000
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000003409 Sox 1 38

Links

Other Sox family TFs
Other Procavia capensis TFs

281 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.000
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.000
AGL62 Arabidopsis thaliana AT5G60440 I 0.000
BGIOSGA022830 Oryza indica BGIOSGA022830 N 0.000
BRADI3G18670 Brachypodium distachyon BRADI3G18670 N 0.000
F775_04223 Aegilops tauschii F775_04223 I 0.000
F775_43210 Aegilops tauschii F775_43210 I 0.000
GRMZM2G459864 Zea mays GRMZM2G459864 N 0.000
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.000
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.000
LPERR06G13350 Leersia perrieri LPERR06G13350 N 0.000
Lus10031073.g Linum usitatissimum Lus10031073.g N 0.000
OBART06G13310 Oryza barthii OBART06G13310 N 0.000
OGLUM06G14250 Oryza glumaepatula OGLUM06G14250 N 0.000
OLONG_015132 Oryza longistaminata OLONG_015132 N 0.000
ONIVA06G15960 Oryza nivara ONIVA06G15960 N 0.000
OPUNC06G12720 Oryza punctata OPUNC06G12720 N 0.000
ORGLA06G0273400 Oryza glaberrima ORGLA06G0273400 N 0.000
ORUFI06G14240 Oryza rufipogon ORUFI06G14240 N 0.000
Pavir.Ba03370 Panicum virgatum Pavir.Ba03370 N 0.000
Pavir.Bb00803 Panicum virgatum Pavir.Bb00803 N 0.000
Pavir.Bb00804 Panicum virgatum Pavir.Bb00804 N 0.000
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.000
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.000
Sb06g015640 Sorghum bicolor Sb06g015640 N 0.000
Sb07g007306 Sorghum bicolor Sb07g007306 N 0.000
Sb07g007373 Sorghum bicolor Sb07g007373 N 0.000
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.000
scaffold_400572.1 Arabidopsis lyrata scaffold_400572.1 N 0.000
Si019951m.g Setaria italica Si019951m.g I 0.000
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.000
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.000