Bostr.25463s0218 (Boechera stricta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Bostr.25463s0218 T334388_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.692 0.917
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.692 0.917
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.25463s0218.1.p Sox 138 205
Bostr.25463s0218.1.p Sox 255 321
Bostr.25463s0218.1.p Sox 381 449

Links

Other Sox family TFs
Other Boechera stricta TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30170.m013751 Ricinus communis 30170.m013751 I 0.000
30174.m008818 Ricinus communis 30174.m008818 I 0.000
AC185108.3_FG011 Zea mays AC185108.3_FG011 I 0.000
AMTR_s00137p00104280 Amborella trichopoda AMTR_s00137p00104280 I 0.000
ZAT10 Arabidopsis thaliana AT1G27730 D 0.000
AZF2 Arabidopsis thaliana AT3G19580 D 0.000
ZAT6 Arabidopsis thaliana AT5G04340 D 0.000
AZF1 Arabidopsis thaliana AT5G67450 D 0.000
BGIOSGA010468 Oryza indica BGIOSGA010468 I 0.000
Bo1g081350 Brassica oleracea Bo1g081350 I 0.000
Bo1g113530 Brassica oleracea Bo1g113530 I 0.000
Bo2g161550 Brassica oleracea Bo2g161550 N 0.000
Bo2g168030 Brassica oleracea Bo2g168030 I 0.000
Bo3g037560 Brassica oleracea Bo3g037560 I 0.000
Bo3g142840 Brassica oleracea Bo3g142840 I 0.000
Bo4g195370 Brassica oleracea Bo4g195370 I 0.000
Bo5g052290 Brassica oleracea Bo5g052290 I 0.000
Bo5g113850 Brassica oleracea Bo5g113850 I 0.000
Bo7g048650 Brassica oleracea Bo7g048650 I 0.000
Bo7g065200 Brassica oleracea Bo7g065200 I 0.000
Bo9g019120 Brassica oleracea Bo9g019120 I 0.000
Bo9g181170 Brassica oleracea Bo9g181170 I 0.000
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.000
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.000
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.000
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.000
Bra000372 Brassica rapa Bra000372 I 0.000
Bra009464 Brassica rapa Bra009464 I 0.000
Bra010922 Brassica rapa Bra010922 I 0.000
Bra012914 Brassica rapa Bra012914 I 0.000
Bra022436 Brassica rapa Bra022436 I 0.000
Bra029315 Brassica rapa Bra029315 N 0.000
Bra029985 Brassica rapa Bra029985 I 0.000
Bra031834 Brassica rapa Bra031834 I 0.000
Bra032845 Brassica rapa Bra032845 I 0.000
Bra033666 Brassica rapa Bra033666 I 0.000
Bra037845 Brassica rapa Bra037845 I 0.000
Bra038219 Brassica rapa Bra038219 I 0.000
Bra040325 Brassica rapa Bra040325 I 0.000
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.000
Cagra.9217s0012 Capsella grandiflora Cagra.9217s0012 I 0.000
Carubv10001868m.g Capsella rubella Carubv10001868m.g I 0.000
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.000
cassava14164.m1 Manihot esculenta cassava14164.m1 I 0.000
cassava19892.m1 Manihot esculenta cassava19892.m1 I 0.000
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.000
Ca_01586 Cicer arietinum Ca_01586 I 0.000
Ca_05641 Cicer arietinum Ca_05641 I 0.000
Ca_18364 Cicer arietinum Ca_18364 I 0.000
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.000
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.000
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.000
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.000
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.000
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.000
Cucsa.219210 Cucumis sativus Cucsa.219210 I 0.000
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.000
Eucgr.D02497 Eucalyptus grandis Eucgr.D02497 I 0.000
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I 0.000
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.000
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.000
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.000
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.000
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.000
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.000
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.000
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.000
GLYMA10G40400 Glycine max GLYMA10G40400 I 0.000
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.000
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.000
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.000
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.000
Gorai.008G106500 Gossypium raimondii Gorai.008G106500 I 0.000
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.000
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.000
LPERR03G19200 Leersia perrieri LPERR03G19200 I 0.000
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.000
MDP0000198015 Malus domestica MDP0000198015 I 0.000
MDP0000319225 Malus domestica MDP0000319225 I 0.000
MDP0000573176 Malus domestica MDP0000573176 I 0.000
MDP0000762756 Malus domestica MDP0000762756 I 0.000
mgf017082m Mimulus guttatus mgf017082m I 0.000
mgf021094m Mimulus guttatus mgf021094m I 0.000
MLOC_51405 Hordeum vulgare MLOC_51405 I 0.000
MLOC_70662 Hordeum vulgare MLOC_70662 I 0.000
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.000
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.000
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.000
OB03G31780 Oryza brachyantha OB03G31780 I 0.000
OBART03G22570 Oryza barthii OBART03G22570 I 0.000
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I 0.000
OLONG_027628 Oryza longistaminata OLONG_027628 I 0.000
OPUNC12G15600 Oryza punctata OPUNC12G15600 I 0.000
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.000
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.000
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I 0.000
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I 0.000
OS03G0437200 Oryza sativa OS03G0437200 I 0.000
OS12G0583700 Oryza sativa OS12G0583700 I 0.000
Pavir.Ba01050 Panicum virgatum Pavir.Ba01050 I 0.000
Pavir.J15191 Panicum virgatum Pavir.J15191 I 0.000
PGSC0003DMG400026020 Solanum tuberosum PGSC0003DMG400026020 I 0.000
PK10188.1 Cannabis sativa PK10188.1 I 0.000
Pm005390 Prunus mume Pm005390 I 0.000
Pm021284 Prunus mume Pm021284 I 0.000
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.000
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.000
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.000
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.000
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.000
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.000
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.000
Sb02g038070 Sorghum bicolor Sb02g038070 I 0.000
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.000
Si032711m.g Setaria italica Si032711m.g I 0.000
Si037343m.g Setaria italica Si037343m.g N 0.000
Solyc01g090840.2 Solanum lycopersicum Solyc01g090840.2 I 0.000
Solyc01g107170.2 Solanum lycopersicum Solyc01g107170.2 I 0.000
TCM_000780 Theobroma cacao TCM_000780 I 0.000
TCM_007214 Theobroma cacao TCM_007214 I 0.000
TCM_034720 Theobroma cacao TCM_034720 I 0.000
Thhalv10001538m.g Eutrema salsugineum Thhalv10001538m.g I 0.000
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.000
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.000
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.000
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I 0.000
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.000
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.000
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.000