CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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T265_15292
(
Opisthorchis viverrini
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
T265_15292
T337109_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
T265_15292
Sox
11
78
PRKPPTAFMLYVKHRRLQSEQLASLPFGERNRILGSEWSNLPADQKAGFFNEAKELRDKYTQLLAEYK
Links
Other
Sox
family TFs
Other
Opisthorchis viverrini
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Al_scaffold_0004_1965
Arabidopsis lyrata
Al_scaffold_0004_1965
N
BHLH52
Arabidopsis thaliana
AT1G30670
N
BHLH53
Arabidopsis thaliana
AT2G34820
N
Bo3g028090
Brassica oleracea
Bo3g028090
N
Bo4g039270
Brassica oleracea
Bo4g039270
N
Bo4g182930
Brassica oleracea
Bo4g182930
N
Bostr.15697s0367
Boechera stricta
Bostr.15697s0367
N
Bostr.23794s0621
Boechera stricta
Bostr.23794s0621
N
Bra005389
Brassica rapa
Bra005389
N
Bra021933
Brassica rapa
Bra021933
N
Bra022993
Brassica rapa
Bra022993
N
BRADI4G29370
Brachypodium distachyon
BRADI4G29370
N
Cagra.1508s0136
Capsella grandiflora
Cagra.1508s0136
N
Carubv10011063m.g
Capsella rubella
Carubv10011063m.g
N
Ciclev10017579m.g
Citrus clementina
Ciclev10017579m.g
N
F775_52642
Aegilops tauschii
F775_52642
N
fgenesh1_pm.C_scaffold_1002485
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002485
N
GLYMA15G41400
Glycine max
GLYMA15G41400
N
GRMZM2G137374
Zea mays
GRMZM2G137374
N
GSMUA_Achr11G16900_001
Musa acuminata
GSMUA_Achr11G16900_001
N
GSMUA_AchrUn_randomG20690_001
Musa acuminata
GSMUA_AchrUn_randomG20690_001
N
Lus10005451.g
Linum usitatissimum
Lus10005451.g
N
Lus10038432.g
Linum usitatissimum
Lus10038432.g
N
MTR_1g060700
Medicago truncatula
MTR_1g060700
N
MTR_2g067000
Medicago truncatula
MTR_2g067000
N
OB07G14260
Oryza brachyantha
OB07G14260
N
orange1.1g041370m.g
Citrus sinensis
orange1.1g041370m.g
N
Pavir.Ca01783
Panicum virgatum
Pavir.Ca01783
N
Pavir.Ca01784
Panicum virgatum
Pavir.Ca01784
N
Pavir.Ia04589
Panicum virgatum
Pavir.Ia04589
N
Pavir.J05526
Panicum virgatum
Pavir.J05526
N
Pm010610
Prunus mume
Pm010610
N
PRUPE_ppa017597mg
Prunus persica
PRUPE_ppa017597mg
N
Sb01g048400
Sorghum bicolor
Sb01g048400
N
Si038598m.g
Setaria italica
Si038598m.g
N
Thhalv10009765m.g
Eutrema salsugineum
Thhalv10009765m.g
N
Thhalv10017751m.g
Eutrema salsugineum
Thhalv10017751m.g
N
Traes_5DL_84C86F76D
Triticum aestivum
Traes_5DL_84C86F76D
N