CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TELCIR_02788 *(Teladorsagia circumcincta)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00505 (HMG_box)	IPR000910	TELCIR_02788	T337163_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
egl-13 M00710_2.00	Caenorhabditis elegans	NNAACAATWN	NWATTGTTNN	PBM Narasimhan et al.(2015) pTH9125	0.549	0.853
Sox102F M03981_2.00	Drosophila melanogaster	ATTGTTCGGTGKN	NMCACCGAACAAT	SELEX Nitta et al.(2015) Sox102F_1	0.549	0.809
Sox102F M03982_2.00	Drosophila melanogaster	NAACAATDDCATTGTTN	NAACAATGHHATTGTTN	SELEX Nitta et al.(2015) Sox102F_2	0.549	0.809
Sox6 M00828_2.00	Mus musculus	WTTGTNNNN	NNNNACAAW	PBM Weirauch et al.(2013) pTH3862	0.469	0.721
SOX6 M05892_2.00	Homo sapiens	DRACAATRVN	NBYATTGTYH	SMiLE-seq Isakova et al.(2017) SOX6	0.469	0.721
Sox6 M08169_2.00	Mus musculus	BCWTTGTYYY	RRRACAAWGV	ChIP-seq Mathelier et al.(2014) MA0515.1	0.469	0.721
Sox6 M09640_2.00	Mus musculus	BHWTTGTBNN	NNVACAAWDV	Misc Heinz et al.(2010) Myotubes-Sox6_GSE32627	0.469	0.721
SOX6 M11300_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX6_Q5	0.469	0.721
Sox5 M00203_2.00	Mus musculus	ATTGTBNN	NNVACAAT	PBM Badis et al.(2009) Sox5_3459	0.463	0.706
SOX5 M05894_2.00	Homo sapiens	DVACAATRVN	NBYATTGTBH	SMiLE-seq Isakova et al.(2017) SOX5	0.463	0.706
Sox5 M02719_2.00	Mus musculus	NAACAAT	ATTGTTN	SELEX Mathelier et al.(2014) MA0087.1	0.463	0.706
SOX5 M09390_2.00	Homo sapiens	NAACAATN	NATTGTTN	Misc Kulakovskiy et al.(2013) SOX5_HUMAN.H11MO.0.C	0.463	0.706
Sox5 M09404_2.00	Mus musculus	NAACAATN	NATTGTTN	Misc Kulakovskiy et al.(2013) SOX5_MOUSE.H11MO.0.C	0.463	0.706
SOX5 M11309_2.00	Homo sapiens	NNAACAATNN	NNATTGTTNN	Transfac Matys et al.(2006) V$SOX5_01	0.463	0.706
SOX5 M11310_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX5_Q5	0.463	0.706
Sox13 M00212_2.00	Mus musculus	RAACAATW	WATTGTTY	PBM Badis et al.(2009) Sox13_1718	0.463	0.691
SOX13 M08166_2.00	Homo sapiens	NNACAATGVNN	NNBCATTGTNN	ChIP-seq Mathelier et al.(2014) MA1120.1	0.463	0.691
D M03969_2.00	Drosophila melanogaster	AMVGAACAAT	ATTGTTCBKT	SELEX Nitta et al.(2015) D_1	0.432	0.500
D M03970_2.00	Drosophila melanogaster	NAACAATDNCATTGTTN	NAACAATGNHATTGTTN	SELEX Nitta et al.(2015) D_2	0.432	0.500
D M06559_2.00	Drosophila melanogaster	BCYWTTGTTNT	ANAACAAWRGV	B1H Mathelier et al.(2014) MA0445.1	0.432	0.500
D M06448_2.00	Drosophila melanogaster	BCYATTGTYNW	WNRACAATRGV	B1H Zhu et al.(2011) D_NAR_FBgn0000411	0.432	0.500
D M09694_2.00	Drosophila melanogaster	RACAAWRGVH	DBCYWTTGTY	Misc Kulakovskiy et al.(2009) D	0.432	0.500
Sox1 M00214_2.00	Mus musculus	NNNNNWBAAW	WTTVWNNNNN	PBM Badis et al.(2009) Sox1_2631	0.428	0.500
Sox1 M03542_2.00	Mus musculus	VACAATWNCATTGTT	AACAATGNWATTGTB	SELEX Jolma et al.(2013) Sox1_1	0.428	0.500
Sox1 M03543_2.00	Mus musculus	NTGAATWNCATTCAN	NTGAATGNWATTCAN	SELEX Jolma et al.(2013) Sox1_2	0.428	0.500
Sox1 M03544_2.00	Mus musculus	TCAATWNCATTGA	TCAATGNWATTGA	SELEX Jolma et al.(2013) Sox1_3	0.428	0.500
Sox1 M03545_2.00	Mus musculus	TGAATDDNHATTCA	TGAATDNHHATTCA	SELEX Jolma et al.(2013) Sox1_4	0.428	0.500
SOX2 M03519_2.00	Homo sapiens	DAACAATGKYAKTGTTN	NAACAMTRMCATTGTTH	SELEX Jolma et al.(2013) SOX2_1	0.428	0.485
SOX2 M03520_2.00	Homo sapiens	VTGAATGDYATTCAN	NTGAATRHCATTCAB	SELEX Jolma et al.(2013) SOX2_2	0.428	0.485
SOX2 M03521_2.00	Homo sapiens	NATCAATGNYATTGAWD	HWTCAATRNCATTGATN	SELEX Jolma et al.(2013) SOX2_3	0.428	0.485
SOX2 M03522_2.00	Homo sapiens	NAACAATANCATTGTTH	DAACAATGNTATTGTTN	SELEX Jolma et al.(2013) SOX2_4	0.428	0.485
SOX2 M03523_2.00	Homo sapiens	HATCAATANCATTGATH	DATCAATGNTATTGATD	SELEX Jolma et al.(2013) SOX2_5	0.428	0.485
SOX2 M03524_2.00	Homo sapiens	DTGAATWNCATTCAH	DTGAATGNWATTCAH	SELEX Jolma et al.(2013) SOX2_6	0.428	0.485
SOX2 M05897_2.00	Homo sapiens	NACAAWRRNN	NNYYWTTGTN	SMiLE-seq Isakova et al.(2017) SOX2	0.428	0.485
Sox2 M08170_2.00	Mus musculus	CCWTTGTB	VACAAWGG	ChIP-seq Mathelier et al.(2014) MA0143.3	0.428	0.485
Sox2 M08041_2.00	Mus musculus	WHWRMADNACAAWRR	YYWTTGTNHTKYWDW	ChIP-seq Chen et al.(2011) SRP000217_Sox2	0.428	0.485
Sox2 M08042_2.00	Mus musculus	TTWRCATNWSAAWRV	BYWTTSWNATGYWAA	ChIP-seq Chen et al.(2011) SRP000712_Sox2	0.428	0.485
SOX2 M09397_2.00	Homo sapiens	BBYYWTTGTBYBB	VVRVACAAWRRVV	Misc Kulakovskiy et al.(2013) SOX2_HUMAN.H11MO.0.A	0.428	0.485
Sox2 M09409_2.00	Mus musculus	THWRCATNACAAWRRV	BYYWTTGTNATGYWDA	Misc Kulakovskiy et al.(2013) SOX2_MOUSE.H11MO.0.A	0.428	0.485
SOX2 M11327_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3_01	0.428	0.485
SOX2 M11328_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3	0.428	0.485
SOX2 M11329_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q4	0.428	0.485
SOX2 M11330_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q6	0.428	0.485
Sox21a M03978_2.00	Drosophila melanogaster	NMACAMTAVCATTGTKN	NMACAATGBTAKTGTKN	SELEX Nitta et al.(2015) Sox21a_1	0.422	0.456
Sox21a M03979_2.00	Drosophila melanogaster	NNACAMTANCATTGTYH	DRACAATGNTAKTGTNN	SELEX Nitta et al.(2015) Sox21a_2	0.422	0.456
Sox14 M03971_2.00	Drosophila melanogaster	BTGTWCGGTR	YACCGWACAV	SELEX Nitta et al.(2015) Sox14_1	0.417	0.471
Sox14 M03972_2.00	Drosophila melanogaster	VACAATDNCATTGTB	VACAATGNHATTGTB	SELEX Nitta et al.(2015) Sox14_2	0.417	0.471
Sox14 M06449_2.00	Drosophila melanogaster	VYYCTTTGTYC	GRACAAAGRRB	B1H Zhu et al.(2011) Sox14_SANGER_10_FBgn0005612	0.417	0.471
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
TELCIR_02788	Sox	258	325	KNKSSSVTVWARDERRKILKAHPDMHNSNISKILGNRWKSMSNSEKQPYYEEQSRLSKLHMEQHPDYR

Links
Other Sox family TFs
Other *Teladorsagia circumcincta* TFs

551 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AGL64	Arabidopsis thaliana	AT1G29962	N
Bostr.15697s0292	Boechera stricta	Bostr.15697s0292	N
Cagra.12398s0004	Capsella grandiflora	Cagra.12398s0004	N
Cagra.18025s0001	Capsella grandiflora	Cagra.18025s0001	N
Cagra.5647s0017	Capsella grandiflora	Cagra.5647s0017	N
Carubv10002683m.g	Capsella rubella	Carubv10002683m.g	N
Carubv10002712m.g	Capsella rubella	Carubv10002712m.g	N
Carubv10002787m.g	Capsella rubella	Carubv10002787m.g	N
Carubv10010430m.g	Capsella rubella	Carubv10010430m.g	N
Carubv10010438m.g	Capsella rubella	Carubv10010438m.g	N
Carubv10010833m.g	Capsella rubella	Carubv10010833m.g	N
Carubv10011216m.g	Capsella rubella	Carubv10011216m.g	N
Carubv10012214m.g	Capsella rubella	Carubv10012214m.g	N
Carubv10012479m.g	Capsella rubella	Carubv10012479m.g	N
Carubv10021267m.g	Capsella rubella	Carubv10021267m.g	N
Carubv10021362m.g	Capsella rubella	Carubv10021362m.g	N
Carubv10021425m.g	Capsella rubella	Carubv10021425m.g	N
Carubv10021446m.g	Capsella rubella	Carubv10021446m.g	N
Carubv10021838m.g	Capsella rubella	Carubv10021838m.g	N
Carubv10022052m.g	Capsella rubella	Carubv10022052m.g	N
Carubv10022123m.g	Capsella rubella	Carubv10022123m.g	N
Carubv10022431m.g	Capsella rubella	Carubv10022431m.g	N
AGL85	Arabidopsis lyrata	fgenesh1_pg.C_scaffold_1002660	N

TELCIR_02788 (Teladorsagia circumcincta) Sox

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

551 Related TFs

TELCIR_02788 **(Teladorsagia circumcincta)
Sox**