PGSC0003DMG401023951 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG401023951 T004529_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.719 0.878
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.719 0.878
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.680 0.898
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400061541 AP2 81 132

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2A Arabidopsis thaliana AT5G05410 D 0.719
PK07402.1 Cannabis sativa PK07402.1 D 0.680
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.718
cassava46663.m1 Manihot esculenta cassava46663.m1 I 0.704
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.719
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.700
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.719
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.718
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.707
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.719
TCM_021596 Theobroma cacao TCM_021596 I 0.711
Carubv10023556m.g Capsella rubella Carubv10023556m.g I 0.707
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.680
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.679
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.698
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I 0.742
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.692
29820.m001008 Ricinus communis 29820.m001008 I 0.726
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.785
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.699
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.699
MTR_7g070220 Medicago truncatula MTR_7g070220 I 0.678
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.680
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.680
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.743
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.752
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.719
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.692
Bra034159 Brassica rapa Bra034159 I 0.677
Bra028759 Brassica rapa Bra028759 I 0.726
Bra005852 Brassica rapa Bra005852 I 0.720
Bo2g006960 Brassica oleracea Bo2g006960 I 0.726
Bo1g141310 Brassica oleracea Bo1g141310 I 0.687