Carubv10024477m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10024477m.g T007921_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2E
M06609_2.00 		Arabidopsis thaliana
NNNHNHMACCGMCWTWD
HWAWGKCGGTKDNDNNN		 Dap-seq
OMalley et al.(2016)
DREB19_col_a 		0.821 0.962
DREB2E
M06610_2.00 		Arabidopsis thaliana
HNHMACCGACWTWD
HWAWGTCGGTKDND		 Dap-seq
OMalley et al.(2016)
DREB19_colamp_a 		0.821 0.962
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024477m AP2 72 131

Links

Other AP2 family TFs
Other Capsella rubella TFs

6 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK18401.1 Cannabis sativa PK18401.1 D 0.000
Pm021043 Prunus mume Pm021043 I 0.000
Cla014511 Citrullus lanatus Cla014511 I 0.000
Pm026758 Prunus mume Pm026758 I 0.000
29711.m000322 Ricinus communis 29711.m000322 I 0.000
29830.m001386 Ricinus communis 29830.m001386 I 0.000
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.000
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.000
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.000
Cucsa.169240 Cucumis sativus Cucsa.169240 I 0.000
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I 0.000
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I 0.000
mgf017107m Mimulus guttatus mgf017107m I 0.000
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I 0.000
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I 0.000
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.000
evm.TU.supercontig_17.155 Carica papaya evm.TU.supercontig_17.155 I 0.000
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I 0.000
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I 0.000
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I 0.000
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I 0.000
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.000
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.000
MDP0000275844 Malus domestica MDP0000275844 I 0.000
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I 0.000
Pavir.Aa02015 Panicum virgatum Pavir.Aa02015 I 0.000
Pavir.Ab01730 Panicum virgatum Pavir.Ab01730 I 0.000
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.000
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I 0.000
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I 0.000
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I 0.000
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.000
BRADI3G11520 Brachypodium distachyon BRADI3G11520 I 0.000
GLYMA07G26910 Glycine max GLYMA07G26910 I 0.000
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.000
GLYMA12G02740 Glycine max GLYMA12G02740 I 0.000
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.000
GRMZM2G114444 Zea mays GRMZM2G114444 I 0.000
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.000
LPERR02G12290 Leersia perrieri LPERR02G12290 I 0.000
MTR_4g075480 Medicago truncatula MTR_4g075480 I 0.000
OB0197G10010 Oryza brachyantha OB0197G10010 I 0.000
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.000
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I 0.000
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I 0.000
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I 0.000
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I 0.000
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.000
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.000
Sb03g028030 Sorghum bicolor Sb03g028030 I 0.000
Si017804m.g Setaria italica Si017804m.g I 0.000
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I 0.000
TCM_000204 Theobroma cacao TCM_000204 I 0.000
TCM_006692 Theobroma cacao TCM_006692 I 0.000
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.000
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.000
Cla001685 Citrullus lanatus Cla001685 I 0.000