Thhalv10013367m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10013367m.g T009931_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TOE2
M00851_2.00 		Arabidopsis thaliana
NNNNTACGAGGWN
NWCCTCGTANNNN		 PBM
Franco-Zorrilla et al.(2014)
TOE2 		0.871 1.000
SMZ
M08402_2.00 		Arabidopsis thaliana
YCTCGTAC
GTACGAGR		 ChIP-chip
Mathelier et al.(2014)
MA0553.1 		0.855 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10013367m AP2 164 214

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SMZ Arabidopsis thaliana AT3G54990 D 0.855
TOE2 Arabidopsis thaliana AT5G60120 D 0.871
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.826
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.863
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.855
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.788
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.871
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.795
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.871
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.855
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.855
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.795
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.871
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.851
Cla020387 Citrullus lanatus Cla020387 I 0.863
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.863
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.863
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.862
MDP0000130802 Malus domestica MDP0000130802 I 0.684
MDP0000281079 Malus domestica MDP0000281079 I 0.820
MDP0000285955 Malus domestica MDP0000285955 I 0.820
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.855
PK16652.1 Cannabis sativa PK16652.1 I 0.863
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.847
SNZ Arabidopsis thaliana AT2G39250 I 0.788
Bo6g068410 Brassica oleracea Bo6g068410 I 0.832
Bo8g087280 Brassica oleracea Bo8g087280 I 0.855
Bo9g141100 Brassica oleracea Bo9g141100 I 0.871
Bra002510 Brassica rapa Bra002510 I 0.871
Bra007123 Brassica rapa Bra007123 I 0.855
Bra020262 Brassica rapa Bra020262 I 0.871
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.788
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.855
Pm018608 Prunus mume Pm018608 I 0.830
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.847
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.863
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.851
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.867
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.863
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.830
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.867
Ca_26761 Cicer arietinum Ca_26761 I 0.812
Al_scaffold_0003_2798 Arabidopsis lyrata Al_scaffold_0003_2798 I 0.691