Sb07g020920 (Sorghum bicolor)
AT hook

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02178 (AT_hook) IPR017956 Sb07g020920 T017786_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-I Y
M02652_2.00 		Pisum sativum
NDWVAAANRVMRWMAY
RTKWYKBYNTTTBWHN		 SELEX
Mathelier et al.(2014)
MA0045.1 		0.991 0.706
HMGA
M01671_2.00 		Arabidopsis thaliana
NNNNDWAWH
DWTWHNNNN		 PBM
Weirauch et al.(2014)
pTH7395 		0.991 0.667
NCU01145
M01693_2.00 		Neurospora crassa
RWATAWWTNN
NNAWWTATWY		 PBM
Weirauch et al.(2014)
pTH8916 		0.991 0.484
FGRRES_05233
M01104_2.00 		Fusarium graminearum
NNNDWWAWWH
DWWTWWHNNN		 PBM
Lambert et al.(2019)
pTH11377 		0.991 0.471
HMGA1
M09769_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGIY_01 		0.991 0.412
HMGA1
M09770_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGIY_Q4 		0.991 0.412
ANIA_01690
M01675_2.00 		Aspergillus nidulans
NNNNRHDDN
NHHDYNNNN		 PBM
Weirauch et al.(2014)
pTH8216 		0.991 0.392
ENSPPYG00000004736
M01685_2.00 		Pongo abelii
NNNNDWWW
WWWHNNNN		 PBM
Weirauch et al.(2014)
pTH9279 		0.991 0.392
athp-3
M01691_2.00 		Caenorhabditis elegans
NNDDWDH
DHWHHNN		 PBM
Weirauch et al.(2014)
pTH9097 		0.991 0.387
Hmga2
M00751_2.00 		Mus musculus
NNNNRHWWNN
NNWWDYNNNN		 PBM
Weirauch et al.(2013)
pTH3046 		0.991 0.373
HMGA2
M09771_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HMGA2_01 		0.991 0.373
NCU05635
M01694_2.00 		Neurospora crassa
NNNWWWWNNN
NNNWWWWNNN		 PBM
Weirauch et al.(2014)
pTH8863 		0.991 0.353
hmg-12
M01690_2.00 		Caenorhabditis elegans
NNAWWTAWWTNN
NNAWWTAWWTNN		 PBM
Weirauch et al.(2014)
pTH8997 		0.991 0.321
Q7DLU9_PEA
M09772_2.00 		Pisum sativum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HMGIY_01 		0.991 0.314
SUM1
M00008_2.00 		Saccharomyces cerevisiae
NNDWWWH
DWWWHNN		 PBM
Badis et al.(2008)
SUM1_2124 		0.991 0.294
SUM1
M07439_2.00 		Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0398.1 		0.991 0.294
SUM1
M08478_2.00 		Saccharomyces cerevisiae
RYGWCASWAAW
WTTWSTGWCRY		 Misc
DeBoer et al.(2011)
YDR310C_383 		0.991 0.294
SUM1
M08479_2.00 		Saccharomyces cerevisiae
DWAAATWWN
NWWATTTWH		 Misc
DeBoer et al.(2011)
YDR310C_478 		0.991 0.294
AHL13
M01672_2.00 		Arabidopsis thaliana
NAWWTAWWWN
NWWWTAWWTN		 PBM
Weirauch et al.(2014)
pTH8202 		0.991 0.275
BRADI3G55950
M01673_2.00 		Brachypodium distachyon
NNNNRHDDN
NHHDYNNNN		 PBM
Weirauch et al.(2014)
pTH9369 		0.991 0.275
FGRRES_17512
M01105_2.00 		Fusarium graminearum
NNNDNWWWW
WWWWNHNNN		 PBM
Lambert et al.(2019)
pTH11412 		0.991 0.275
OS02G0824300
M01688_2.00 		Oryza sativa
NNDWAWWN
NWWTWHNN		 PBM
Weirauch et al.(2014)
pTH8406 		0.991 0.275
VIT_08s0007g04020
M01689_2.00 		Vitis vinifera
DBNDDDDDDN
NHHHHHHNVH		 PBM
Weirauch et al.(2014)
pTH9295 		0.991 0.275
TVAG_474020
M01106_2.00 		Trichomonas vaginalis
DNWWWAWW
WWTWWWNH		 PBM
Lambert et al.(2019)
pTH11493 		0.991 0.255
ATEG_07399
M01676_2.00 		Aspergillus terreus
DHNNHNDWWW
WWWHNDNNDH		 PBM
Weirauch et al.(2014)
pTH9237 		0.991 0.176
phf21ab
M01680_2.00 		Gasterosteus aculeatus
AAAAWAAA
TTTWTTTT		 PBM
Weirauch et al.(2014)
pTH9180 		0.991 0.157
Ahctf1
M00750_2.00 		Mus musculus
AAAWAWAW
ATWTWTTT		 PBM
Weirauch et al.(2013)
pTH2361 		0.991 0.157
BRADI5G22430
M01674_2.00 		Brachypodium distachyon
VNRDDDHDD
HHDHHHYNB		 PBM
Weirauch et al.(2014)
pTH9242 		0.991 0.137
ENSACAG00000014978
M01677_2.00 		Anolis carolinensis
NNNNNDRH
DYHNNNNN		 PBM
Weirauch et al.(2014)
pTH9222 		0.991 0.137
phf21ab
M01678_2.00 		Danio rerio
NNNDNADW
WHTNHNNN		 PBM
Weirauch et al.(2014)
pTH9254 		0.991 0.137
kmt2cb
M01679_2.00 		Danio rerio
WWAWAWAT
ATWTWTWW		 PBM
Weirauch et al.(2014)
pTH7876 		0.991 0.137
PHF21A
M01681_2.00 		Meleagris gallopavo
HDNHNNDNHD
HDNHNNDNHD		 PBM
Weirauch et al.(2014)
pTH7875 		0.991 0.137
PHF21A
M01103_2.00 		Monodelphis domestica
NNNAWATWAATN
NATTWATWTNNN		 PBM
Lambert et al.(2019)
pTH9309 		0.991 0.137
PHF21A
M01682_2.00 		Monodelphis domestica
NNNNNHRH
DYDNNNNN		 PBM
Weirauch et al.(2014)
pTH9335 		0.991 0.137
Phf21a
M01684_2.00 		Mus musculus
NNNATATWAATN
NATTWATATNNN		 PBM
Weirauch et al.(2014)
pTH8550 		0.991 0.137
Xrp1
M01686_2.00 		Drosophila melanogaster
NNNNDWAWW
WWTWHNNNN		 PBM
Weirauch et al.(2014)
pTH9260 		0.991 0.137
MTR_4g101990
M01687_2.00 		Medicago truncatula
AAAWTAAT
ATTAWTTT		 PBM
Weirauch et al.(2014)
pTH9209 		0.991 0.137
PK26376.1
M01108_2.00 		Cannabis sativa
DDWWWAWW
WWTWWWHH		 PBM
Lambert et al.(2019)
pTH11261 		0.991 0.137
Xrp1
M05900_2.00 		Drosophila melanogaster
RTKRYGYAAT
ATTRCRYMAY		 B1H
Zhu et al.(2011)
Xrp1_CG6272_SANGER_5_FBgn0261113 		0.991 0.137
Setbp1
M01683_2.00 		Mus musculus
NDNNNNNNHN
NDNNNNNNHN		 PBM
Weirauch et al.(2014)
pTH1294 		0.991 0.118
estExt_fgeneshNG_pg.C_820014
M01692_2.00 		Naegleria gruberi
NNNNNDRH
DYHNNNNN		 PBM
Weirauch et al.(2014)
pTH9380 		0.991 0.118
PK00377.1
M01107_2.00 		Cannabis sativa
DAWWWAWW
WWTWWWTH		 PBM
Lambert et al.(2019)
pTH11338 		0.991 0.118
SUM1
M01517_2.00 		Saccharomyces cerevisiae
NNNDWAWW
WWTWHNNN		 PBM
Zhu et al.(2009)
Sum1 		0.991 0.020
For this family, TFs with SR scores > 0.990 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb07g020920.1 AT hook 87 99
Sb07g020920.1 AT hook 115 127
Sb07g020920.1 AT hook 140 152
Sb07g020920.1 AT hook 178 189

Links

Other AT hook family TFs
Other Sorghum bicolor TFs

1072 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB98 Arabidopsis thaliana AT4G18770 D
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I
BGIOSGA022369 Oryza indica BGIOSGA022369 I
BGIOSGA036541 Oryza indica BGIOSGA036541 I
Bo1g019910 Brassica oleracea Bo1g019910 I
Bo2g028290 Brassica oleracea Bo2g028290 I
Bo3g018490 Brassica oleracea Bo3g018490 I
Bo3g157300 Brassica oleracea Bo3g157300 I
Bo7g106240 Brassica oleracea Bo7g106240 I
Bra006744 Brassica rapa Bra006744 I
Bra012579 Brassica rapa Bra012579 I
Bra013346 Brassica rapa Bra013346 I
Bra020346 Brassica rapa Bra020346 I
Bra020992 Brassica rapa Bra020992 I
Bra025299 Brassica rapa Bra025299 I
F775_22212 Aegilops tauschii F775_22212 I
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I
GLYMA05G02300 Glycine max GLYMA05G02300 I
GLYMA06G19280 Glycine max GLYMA06G19280 I
GRMZM2G302549 Zea mays GRMZM2G302549 I
GRMZM5G870592 Zea mays GRMZM5G870592 I
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I
LPERR06G03780 Leersia perrieri LPERR06G03780 I
LPERR12G04190 Leersia perrieri LPERR12G04190 I
MTR_3g077650 Medicago truncatula MTR_3g077650 I
MTR_5g049190 Medicago truncatula MTR_5g049190 I
OB06G13860 Oryza brachyantha OB06G13860 I
OB12G14410 Oryza brachyantha OB12G14410 I
OBART06G04170 Oryza barthii OBART06G04170 I
OBART12G04480 Oryza barthii OBART12G04480 I
OBART12G04500 Oryza barthii OBART12G04500 I
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I
OLONG_008158 Oryza longistaminata OLONG_008158 I
OLONG_010000 Oryza longistaminata OLONG_010000 I
OMERI06G04840 Oryza meridionalis OMERI06G04840 I
OMERI12G02760 Oryza meridionalis OMERI12G02760 I
ONIVA06G05390 Oryza nivara ONIVA06G05390 I
ONIVA12G04220 Oryza nivara ONIVA12G04220 I
OPUNC06G03990 Oryza punctata OPUNC06G03990 I
OPUNC12G04510 Oryza punctata OPUNC12G04510 I
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I
OS06G0162700 Oryza sativa OS06G0162700 I
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I
Sb01g005100 Sorghum bicolor Sb01g005100 I
MYB98 Arabidopsis lyrata scaffold_702543.1 I
Si039046m.g Setaria italica Si039046m.g I
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I
TCM_012087 Theobroma cacao TCM_012087 I
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I
TRIUR3_12421 Triticum urartu TRIUR3_12421 I
MYB98 Vitis vinifera VIT_17s0000g08550 I
Ca_07482 Cicer arietinum Ca_07482 I
Ca_17087 Cicer arietinum Ca_17087 I
Ca_17294 Cicer arietinum Ca_17294 I
Ca_19427 Cicer arietinum Ca_19427 I
Cla019490 Citrullus lanatus Cla019490 I
Pm000541 Prunus mume Pm000541 I
Pm024743 Prunus mume Pm024743 I
29917.m001977 Ricinus communis 29917.m001977 I
30147.m013937 Ricinus communis 30147.m013937 I
cassava19706.m1 Manihot esculenta cassava19706.m1 I
cassava33974.m1 Manihot esculenta cassava33974.m1 I
cassava9008.m1 Manihot esculenta cassava9008.m1 I
Cucsa.196850 Cucumis sativus Cucsa.196850 I
mgf023372m Mimulus guttatus mgf023372m I
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I
Carubv10006734m.g Capsella rubella Carubv10006734m.g I
Carubv10028458m.g Capsella rubella Carubv10028458m.g I
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I
Eucgr.B00300 Eucalyptus grandis Eucgr.B00300 I
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I
Lus10002384.g Linum usitatissimum Lus10002384.g I
Lus10027695.g Linum usitatissimum Lus10027695.g I
Lus10039966.g Linum usitatissimum Lus10039966.g I
Lus10042111.g Linum usitatissimum Lus10042111.g I
MDP0000215359 Malus domestica MDP0000215359 I
MDP0000319656 Malus domestica MDP0000319656 I
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I
Pavir.J02497 Panicum virgatum Pavir.J02497 I
Pavir.J02718 Panicum virgatum Pavir.J02718 I
Pavir.J25000 Panicum virgatum Pavir.J25000 I
Pavir.J37434 Panicum virgatum Pavir.J37434 I
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I
MYB64 Arabidopsis thaliana AT5G11050 N
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N
GLYMA05G08761 Glycine max GLYMA05G08761 N
GLYMA18G07360 Glycine max GLYMA18G07360 N
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N
MTR_3g463400 Medicago truncatula MTR_3g463400 N
MTR_4g105660 Medicago truncatula MTR_4g105660 N
MTR_5g070020 Medicago truncatula MTR_5g070020 N
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N
TCM_041651 Theobroma cacao TCM_041651 N
cassava26507.m1 Manihot esculenta cassava26507.m1 N
Cucsa.146980 Cucumis sativus Cucsa.146980 N
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N
Carubv10003695m.g Capsella rubella Carubv10003695m.g N
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N
Lus10018220.g Linum usitatissimum Lus10018220.g N
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N