Carubv10022415m.g (Capsella rubella)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Carubv10022415m.g T022887_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022415m B3 124 226
Carubv10022415m B3 569 615

Links

Other B3 family TFs
Other Capsella rubella TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.826
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.800
TCM_027113 Theobroma cacao TCM_027113 I 0.873
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.731
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.898
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.750
Traes_2DL_A86E54838 Triticum aestivum Traes_2DL_A86E54838 N 0.761
cassava11454.m1 Manihot esculenta cassava11454.m1 N 0.833
cassava11453.m1 Manihot esculenta cassava11453.m1 N 0.833
29609.m000587 Ricinus communis 29609.m000587 N 0.871
Cla015243 Citrullus lanatus Cla015243 N 0.750
Cla001927 Citrullus lanatus Cla001927 N 0.875
Ca_17636 Cicer arietinum Ca_17636 N 0.708
VIT_18s0089g00910 Vitis vinifera VIT_18s0089g00910 N 0.743
TRIUR3_33501 Triticum urartu TRIUR3_33501 N 0.729
cassava7098.valid.m1 Manihot esculenta cassava7098.valid.m1 N 0.833
Traes_2AL_89543BA1A Triticum aestivum Traes_2AL_89543BA1A N 0.729
Solyc01g103050.2 Solanum lycopersicum Solyc01g103050.2 N 0.812
Sb04g022830 Sorghum bicolor Sb04g022830 N 0.766
cassava11455.m1 Manihot esculenta cassava11455.m1 N 0.833
cassava11456.m1 Manihot esculenta cassava11456.m1 N 0.833
POPTR_0003s00890 Populus trichocarpa POPTR_0003s00890 N 0.828
cassava7099.valid.m1 Manihot esculenta cassava7099.valid.m1 N 0.833
Cucsa.183410 Cucumis sativus Cucsa.183410 N 0.875
mgf006427m Mimulus guttatus mgf006427m N 0.845
Bostr.10040s0256 Boechera stricta Bostr.10040s0256 N 0.870
Cagra.0996s0001 Capsella grandiflora Cagra.0996s0001 N 1.000
Ciclev10000491m.g Citrus clementina Ciclev10000491m.g N 0.854
Gorai.011G091100 Gossypium raimondii Gorai.011G091100 N 0.785
Lus10007440.g Linum usitatissimum Lus10007440.g N 0.884
Lus10024455.g Linum usitatissimum Lus10024455.g N 0.903
SapurV1A.0225s0120 Salix purpurea SapurV1A.0225s0120 N 0.826
Thhalv10023326m.g Eutrema salsugineum Thhalv10023326m.g N 0.875
OLONG_019549 Oryza longistaminata OLONG_019549 N 0.716
ARF1 Arabidopsis thaliana AT1G59750 N 0.869
BGIOSGA008429 Oryza indica BGIOSGA008429 N 0.729
BGIOSGA036199 Oryza indica BGIOSGA036199 N 0.716
Bo1g090350 Brassica oleracea Bo1g090350 N 0.889
Bo4g083590 Brassica oleracea Bo4g083590 N 0.938
Bra035427 Brassica rapa Bra035427 N 0.889
ARF1 Arabidopsis lyrata fgenesh2_kg.2__468__AT1G59750.1 N 0.958
GLYMA07G40270 Glycine max GLYMA07G40270 N 0.819
GLYMA12G28550 Glycine max GLYMA12G28550 N 0.889
OBART02G20600 Oryza barthii OBART02G20600 N 0.729
OBART12G11990 Oryza barthii OBART12G11990 N 0.716
OGLUM02G20880 Oryza glumaepatula OGLUM02G20880 N 0.729
OGLUM12G13560 Oryza glumaepatula OGLUM12G13560 N 0.716
OLONG_012362 Oryza longistaminata OLONG_012362 N 0.729
PRUPE_ppa002394mg Prunus persica PRUPE_ppa002394mg N 0.840
OMERI02G20310 Oryza meridionalis OMERI02G20310 N 0.729
OMERI12G08550 Oryza meridionalis OMERI12G08550 N 0.716
ONIVA02G22590 Oryza nivara ONIVA02G22590 N 0.729
ONIVA12G12070 Oryza nivara ONIVA12G12070 N 0.716
OPUNC02G18520 Oryza punctata OPUNC02G18520 N 0.729
OPUNC12G10620 Oryza punctata OPUNC12G10620 N 0.716
ORGLA02G0176700 Oryza glaberrima ORGLA02G0176700 N 0.729
ORGLA12G0109100 Oryza glaberrima ORGLA12G0109100 N 0.716
ORUFI02G21640 Oryza rufipogon ORUFI02G21640 N 0.729
ORUFI12G13110 Oryza rufipogon ORUFI12G13110 N 0.701
ARF7 Oryza sativa OS02G0557200 N 0.729
ARF24 Oryza sativa OS12G0479400 N 0.716
AMTR_s00021p00221770 Amborella trichopoda AMTR_s00021p00221770 N 0.722