CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK28293.1
(
Cannabis sativa
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF06217 (GAGA_bind)
IPR010409
PK28293.1
T024913_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK28293.1
BBR
53
336
MDDDSLRNWGYYEASFKGHLGLQLMSSMSDQRDTKPFLPGRDPTTVMVNSNGTFHTNHPRDCVVSDAPVPMNYGRDSWVNHRDKFLNMLPPNTNYGVLPETSGAHSMQMLQPPEAAPRDERAVVGRIEEPVVNKESGPSKKRQSGGAPKTPKVKKPRKPKENNNAALVRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNVSVYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRSYWARHGTNKFVTIR
Links
Other
BBR
family TFs
Other
Cannabis sativa
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
RGD1304587
Rattus norvegicus
ENSRNOG00000002944
I
1.000
C1orf35
Otolemur garnettii
ENSOGAG00000010978
I
1.000
OMERI10G00680
Oryza meridionalis
OMERI10G00680
I
0.810
Traes_4BL_011308A76
Triticum aestivum
Traes_4BL_011308A76
I
0.838
chr4.CM0387.290.nc
Lotus japonicus
chr4.CM0387.290.nc
N
0.733
SapurV1A.0055s0040
Salix purpurea
SapurV1A.0055s0040
N
0.731
SapurV1A.0015s0840
Salix purpurea
SapurV1A.0015s0840
N
0.751
orange1.1g022806m.g
Citrus sinensis
orange1.1g022806m.g
N
0.749
MDP0000826219
Malus domestica
MDP0000826219
N
0.788
MDP0000320521
Malus domestica
MDP0000320521
N
0.780
Gorai.012G183100
Gossypium raimondii
Gorai.012G183100
N
0.714
Gorai.002G171200
Gossypium raimondii
Gorai.002G171200
N
0.744
gene00620-v1.0-hybrid
Fragaria vesca
gene00620-v1.0-hybrid
N
0.768
evm.TU.supercontig_2.121
Carica papaya
evm.TU.supercontig_2.121
N
0.774
Eucgr.G02067
Eucalyptus grandis
Eucgr.G02067
N
0.736
Ciclev10015354m.g
Citrus clementina
Ciclev10015354m.g
N
0.753
Cucsa.026600
Cucumis sativus
Cucsa.026600
N
0.706
cassava39873.m1
Manihot esculenta
cassava39873.m1
N
0.806
cassava18078.valid.m1
Manihot esculenta
cassava18078.valid.m1
N
0.794
cassava18077.valid.m1
Manihot esculenta
cassava18077.valid.m1
N
0.794
29780.m001393
Ricinus communis
29780.m001393
N
0.810
Pm005924
Prunus mume
Pm005924
N
0.822
Cla005911
Citrullus lanatus
Cla005911
N
0.728
TCM_011212
Theobroma cacao
TCM_011212
N
0.755
PRUPE_ppa009765mg
Prunus persica
PRUPE_ppa009765mg
N
0.813
POPTR_0010s11180
Populus trichocarpa
POPTR_0010s11180
N
0.753
POPTR_0008s13960
Populus trichocarpa
POPTR_0008s13960
N
0.747
GLYMA08G09780
Glycine max
GLYMA08G09780
N
0.712
GLYMA05G26790
Glycine max
GLYMA05G26790
N
0.708