OBART08G18760 (Oryza barthii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 OBART08G18760 T042168_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.914 0.922
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.901 0.863
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.901 0.863
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.888 0.922
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.888 0.882
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.875 0.902
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.875 0.882
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.875 0.882
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.875 0.863
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.868 0.804
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.864 0.804
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.864 0.784
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.864 0.784
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART08G18760.1 bHLH 184 234

Links

Other bHLH family TFs
Other Oryza barthii TFs

884 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000434703 Malus domestica MDP0000434703 I 0.000
evm.TU.contig_30005.2 Carica papaya evm.TU.contig_30005.2 N 0.000
MDP0000278770 Malus domestica MDP0000278770 N 0.000
MDP0000233925 Malus domestica MDP0000233925 N 0.000
evm.TU.supercontig_439.5 Carica papaya evm.TU.supercontig_439.5 N 0.000
evm.TU.supercontig_348.10 Carica papaya evm.TU.supercontig_348.10 N 0.000
evm.TU.supercontig_347.5 Carica papaya evm.TU.supercontig_347.5 N 0.000
evm.TU.supercontig_347.14 Carica papaya evm.TU.supercontig_347.14 N 0.000
evm.TU.supercontig_2423.4 Carica papaya evm.TU.supercontig_2423.4 N 0.000
evm.TU.contig_46312 Carica papaya evm.TU.contig_46312 N 0.000
evm.TU.contig_43437.1 Carica papaya evm.TU.contig_43437.1 N 0.000
evm.TU.contig_38802 Carica papaya evm.TU.contig_38802 N 0.000
evm.TU.contig_37718 Carica papaya evm.TU.contig_37718 N 0.000
evm.TU.contig_35554.1 Carica papaya evm.TU.contig_35554.1 N 0.000
evm.TU.contig_31965.1 Carica papaya evm.TU.contig_31965.1 N 0.000
GLYMA20G27320 Glycine max GLYMA20G27320 N 0.000
Eucgr.I02506 Eucalyptus grandis Eucgr.I02506 N 0.000
Pm021017 Prunus mume Pm021017 N 0.000
Ca_04660 Cicer arietinum Ca_04660 N 0.000
Ca_04659 Cicer arietinum Ca_04659 N 0.000
PRUPE_ppa022494mg Prunus persica PRUPE_ppa022494mg N 0.000
MTR_8g043650 Medicago truncatula MTR_8g043650 N 0.000
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.000
MTR_3g052870 Medicago truncatula MTR_3g052870 N 0.000
MTR_1g105920 Medicago truncatula MTR_1g105920 N 0.000
MTR_1g105910 Medicago truncatula MTR_1g105910 N 0.000
MTR_1g012570 Medicago truncatula MTR_1g012570 N 0.000
GLYMA20G27341 Glycine max GLYMA20G27341 N 0.000
GLYMA20G27330 Glycine max GLYMA20G27330 N 0.000