Ciclev10005872m.g (Citrus clementina)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Ciclev10005872m.g T049479_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.846 0.750
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.846 0.750
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10005872m bHLH 60 111
Ciclev10005930m bHLH 46 97

Links

Other bHLH family TFs
Other Citrus clementina TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.000
MYB27 Arabidopsis thaliana AT3G53200 D 0.000
WER Arabidopsis thaliana AT5G14750 D 0.000
MYB24 Arabidopsis thaliana AT5G40350 D 0.000
MYB59 Arabidopsis thaliana AT5G59780 D 0.000
MYB21 Arabidopsis thaliana AT3G27810 I 0.000
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.000
MYB86 Arabidopsis thaliana AT5G26660 I 0.000
TT2 Arabidopsis thaliana AT5G35550 I 0.000
BRADI1G45510 Brachypodium distachyon BRADI1G45510 I 0.000
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I 0.000
GLYMA16G00920 Glycine max GLYMA16G00920 I 0.000
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.000
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.000
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.000
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.000
MLOC_16981 Hordeum vulgare MLOC_16981 I 0.000
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.000
MLOC_56753 Hordeum vulgare MLOC_56753 I 0.000
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.000
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.000
MTR_6g055910 Medicago truncatula MTR_6g055910 I 0.000
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.000
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.000
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.000
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.000
TCM_005371 Theobroma cacao TCM_005371 I 0.000
TCM_021433 Theobroma cacao TCM_021433 I 0.000
TCM_032927 Theobroma cacao TCM_032927 I 0.000
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.000
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.000
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.000
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I 0.000
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.000
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.000
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.000
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.000
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.000
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.000
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I 0.000
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.000
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.000
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I 0.000
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.000
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.000
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.000
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I 0.000
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.000
BGIOSGA002307 Oryza indica BGIOSGA002307 N 0.000
BGIOSGA013008 Oryza indica BGIOSGA013008 N 0.000
BGIOSGA027658 Oryza indica BGIOSGA027658 N 0.000
BGIOSGA037085 Oryza indica BGIOSGA037085 N 0.000
Bo2g011790 Brassica oleracea Bo2g011790 N 0.000
Bo5g131980 Brassica oleracea Bo5g131980 N 0.000
Bra009910 Brassica rapa Bra009910 N 0.000
Bra031041 Brassica rapa Bra031041 N 0.000
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.000
F775_22650 Aegilops tauschii F775_22650 N 0.000
F775_32151 Aegilops tauschii F775_32151 N 0.000
GLYMA08G44950 Glycine max GLYMA08G44950 N 0.000
GRMZM2G032180 Zea mays GRMZM2G032180 N 0.000
OBART12G16130 Oryza barthii OBART12G16130 N 0.000
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N 0.000
ORGLA01G0040600 Oryza glaberrima ORGLA01G0040600 N 0.000
OS01G0975300 Oryza sativa OS01G0975300 N 0.000
Si003873m.g Setaria italica Si003873m.g N 0.000
Traes_2DL_304E62CCE Triticum aestivum Traes_2DL_304E62CCE N 0.000
Traes_2DS_EEE59C2E7 Triticum aestivum Traes_2DS_EEE59C2E7 N 0.000
Traes_3DL_75F8A05CF Triticum aestivum Traes_3DL_75F8A05CF N 0.000
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N 0.000
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N 0.000
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N 0.000
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N 0.000
TRIUR3_12300 Triticum urartu TRIUR3_12300 N 0.000
TRIUR3_32110 Triticum urartu TRIUR3_32110 N 0.000
30147.m013749 Ricinus communis 30147.m013749 N 0.000
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N 0.000
mgf001247m Mimulus guttatus mgf001247m N 0.000
mgf009707m Mimulus guttatus mgf009707m N 0.000
mgf018110m Mimulus guttatus mgf018110m N 0.000
mgf021749m Mimulus guttatus mgf021749m N 0.000
mgf026463m Mimulus guttatus mgf026463m N 0.000
mgf026560m Mimulus guttatus mgf026560m N 0.000
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N 0.000
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N 0.000
Cagra.17198s0001 Capsella grandiflora Cagra.17198s0001 N 0.000
Cagra.2519s0060 Capsella grandiflora Cagra.2519s0060 N 0.000
Ciclev10029019m.g Citrus clementina Ciclev10029019m.g N 0.000
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.000
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.000
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N 0.000
evm.TU.supercontig_87.85 Carica papaya evm.TU.supercontig_87.85 N 0.000
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N 0.000
MDP0000139931 Malus domestica MDP0000139931 N 0.000
MDP0000153773 Malus domestica MDP0000153773 N 0.000
MDP0000169874 Malus domestica MDP0000169874 N 0.000
MDP0000475808 Malus domestica MDP0000475808 N 0.000
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N 0.000
Pavir.Gb01276 Panicum virgatum Pavir.Gb01276 N 0.000
Pavir.Ia02093 Panicum virgatum Pavir.Ia02093 N 0.000
Pavir.J19088 Panicum virgatum Pavir.J19088 N 0.000
Pavir.J23620 Panicum virgatum Pavir.J23620 N 0.000
Pavir.J24653 Panicum virgatum Pavir.J24653 N 0.000
PK27824.1 Cannabis sativa PK27824.1 N 0.000
LjSGA_032074.1 Lotus japonicus LjSGA_032074.1 N 0.000
LjSGA_148662.1 Lotus japonicus LjSGA_148662.1 N 0.000
PDK_20s1338951g004 Phoenix dactylifera PDK_20s1338951g004 N 0.000
PDK_20s1354851g002 Phoenix dactylifera PDK_20s1354851g002 N 0.000
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N 0.000
PDK_20s1415541g003 Phoenix dactylifera PDK_20s1415541g003 N 0.000
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N 0.000
PDK_20s1933711g001 Phoenix dactylifera PDK_20s1933711g001 N 0.000