usf1 (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-5918718 T051825_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI35363 bHLH 199 254

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_6.261 Carica papaya evm.TU.supercontig_6.261 N
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N
Cucsa.381750 Cucumis sativus Cucsa.381750 N
Bostr.7867s1467 Boechera stricta Bostr.7867s1467 N
Cagra.2236s0009 Capsella grandiflora Cagra.2236s0009 N
Cagra.3126s0019 Capsella grandiflora Cagra.3126s0019 N
Carubv10006250m.g Capsella rubella Carubv10006250m.g N
Carubv10015336m.g Capsella rubella Carubv10015336m.g N
Pm026767 Prunus mume Pm026767 N
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N
MDP0000121628 Malus domestica MDP0000121628 N
MDP0000198079 Malus domestica MDP0000198079 N
MDP0000632148 Malus domestica MDP0000632148 N
Thhalv10022795m.g Eutrema salsugineum Thhalv10022795m.g N
Thhalv10026001m.g Eutrema salsugineum Thhalv10026001m.g N
PK01533.1 Cannabis sativa PK01533.1 N
CSP3 Arabidopsis thaliana AT2G17870 N
Cla016088 Citrullus lanatus Cla016088 N
Ca_11038 Cicer arietinum Ca_11038 N
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N
PRUPE_ppa010531mg Prunus persica PRUPE_ppa010531mg N
GLYMA11G11290 Glycine max GLYMA11G11290 N
GLYMA04G00660 Glycine max GLYMA04G00660 N
CSDP1 Arabidopsis lyrata fgenesh2_kg.7__465__AT4G36020.1 N
ATCSP3 Arabidopsis lyrata fgenesh2_kg.3__3388__AT2G17870.1 N
Bra017742 Brassica rapa Bra017742 N
Bra011655 Brassica rapa Bra011655 N
Bra002099 Brassica rapa Bra002099 N
Bo7g117730 Brassica oleracea Bo7g117730 N
Bo7g012920 Brassica oleracea Bo7g012920 N
Bo1g006000 Brassica oleracea Bo1g006000 N
CSP1 Arabidopsis thaliana AT4G36020 N