Bra008976 (Brassica rapa)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 Bra008976 T057423_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HY5
M06790_2.00 		Arabidopsis thaliana
DNHGVTGACGTSDMN
NKHSACGTCABCDNH		 Dap-seq
OMalley et al.(2016)
HY5_colamp_v3a 		0.850 0.938
HY5
M08407_2.00 		Arabidopsis thaliana
NNHGMCACGTGKCDNN
NNHGMCACGTGKCDNN		 ChIP-chip
Mathelier et al.(2014)
MA0551.1 		0.850 0.938
HY5
M09919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HY5_01 		0.850 0.938
Q39895_SOYBN
M10048_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_01 		0.850 0.875
Q39895_SOYBN
M10049_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_02 		0.850 0.875
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra008976.1-P bZIP 83 146

Links

Other bZIP family TFs
Other Brassica rapa TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HY5 Arabidopsis thaliana AT5G11260 D 0.850
Q39895_SOYBN Glycine max Q39895_SOYBN D 0.850
BGIOSGA002286 Oryza indica BGIOSGA002286 I 0.804
BGIOSGA006916 Oryza indica BGIOSGA006916 I 0.850
BGIOSGA023213 Oryza indica BGIOSGA023213 I 0.821
Bo2g010330 Brassica oleracea Bo2g010330 I 0.857
Bo9g171430 Brassica oleracea Bo9g171430 I 0.857
Bra023317 Brassica rapa Bra023317 I 0.857
BRADI1G36750 Brachypodium distachyon BRADI1G36750 I 0.836
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I 0.850
F775_05429 Aegilops tauschii F775_05429 I 0.803
GLYMA08G41450 Glycine max GLYMA08G41450 I 0.850
GLYMA18G14750 Glycine max GLYMA18G14750 I 0.850
GRMZM2G137046 Zea mays GRMZM2G137046 I 0.840
GRMZM2G140355 Zea mays GRMZM2G140355 I 0.847
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I 0.850
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I 0.850
GSMUA_Achr6G05280_001 Musa acuminata GSMUA_Achr6G05280_001 I 0.818
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I 0.846
GSMUA_Achr9G28570_001 Musa acuminata GSMUA_Achr9G28570_001 I 0.846
LPERR02G06800 Leersia perrieri LPERR02G06800 I 0.803
LPERR06G16860 Leersia perrieri LPERR06G16860 I 0.809
MTR_3g436010 Medicago truncatula MTR_3g436010 I 0.850
MTR_7g057160 Medicago truncatula MTR_7g057160 I 0.783
OB02G17160 Oryza brachyantha OB02G17160 I 0.850
OBART02G07840 Oryza barthii OBART02G07840 I 0.815
OBART06G20230 Oryza barthii OBART06G20230 I 0.821
OBART06G20240 Oryza barthii OBART06G20240 I 0.785
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I 0.850
OGLUM06G21280 Oryza glumaepatula OGLUM06G21280 I 0.821
OLONG_013539 Oryza longistaminata OLONG_013539 I 0.785
OLONG_023968 Oryza longistaminata OLONG_023968 I 0.803
OMERI06G20830 Oryza meridionalis OMERI06G20830 I 0.821
ONIVA02G09400 Oryza nivara ONIVA02G09400 I 0.850
OPUNC02G07060 Oryza punctata OPUNC02G07060 I 0.850
OPUNC06G18440 Oryza punctata OPUNC06G18440 I 0.821
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I 0.850
ORUFI03G26360 Oryza rufipogon ORUFI03G26360 I 0.815
OS02G0203000 Oryza sativa OS02G0203000 I 0.850
OS06G0601500 Oryza sativa OS06G0601500 I 0.785
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I 0.850
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I 0.850
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I 0.850
PRUPE_ppa011967mg Prunus persica PRUPE_ppa011967mg I 0.784
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I 0.850
Sb04g007060 Sorghum bicolor Sb04g007060 I 0.840
Sb10g023420 Sorghum bicolor Sb10g023420 I 0.847
HY5 Arabidopsis lyrata scaffold_601144.1 I 0.850
SELMODRAFT_173274 Selaginella moellendorffii SELMODRAFT_173274 I 0.840
SELMODRAFT_440988 Selaginella moellendorffii SELMODRAFT_440988 I 0.841
SELMODRAFT_451326 Selaginella moellendorffii SELMODRAFT_451326 I 0.841
SELMODRAFT_451330 Selaginella moellendorffii SELMODRAFT_451330 I 0.840
Si018524m.g Setaria italica Si018524m.g I 0.840
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I 0.850
TCM_038392 Theobroma cacao TCM_038392 I 0.838
Traes_6AS_AFF47E71C Triticum aestivum Traes_6AS_AFF47E71C I 0.803
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I 0.850
Traes_6DS_F8DFD036F Triticum aestivum Traes_6DS_F8DFD036F I 0.788
Traes_7DL_68B814464 Triticum aestivum Traes_7DL_68B814464 I 0.825
TRIUR3_25965 Triticum urartu TRIUR3_25965 I 0.803
HY5 Vitis vinifera VIT_04s0008g05210 I 0.850
Ca_21380 Cicer arietinum Ca_21380 I 0.850
Ca_22618 Cicer arietinum Ca_22618 I 0.788
Cla021273 Citrullus lanatus Cla021273 I 0.816
Cla022656 Citrullus lanatus Cla022656 I 0.850
Pm007163 Prunus mume Pm007163 I 0.784
29848.m004650 Ricinus communis 29848.m004650 I 0.850
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I 0.850
Cucsa.162360 Cucumis sativus Cucsa.162360 I 0.850
Cucsa.310450 Cucumis sativus Cucsa.310450 I 0.832
e_gw1.80.85.1 Physcomitrella patens e_gw1.80.85.1 I 0.827
mgf012104m Mimulus guttatus mgf012104m I 0.842
mgf014305m Mimulus guttatus mgf014305m I 0.842
SAR_estExt_Genewise1Plus.C_20674 Micromonas pusilla SAR_estExt_Genewise1Plus.C_20674 I 0.812
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I 0.850
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I 0.850
Bostr.29827s0269 Boechera stricta Bostr.29827s0269 I 0.818
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I 0.850
Carubv10003520m.g Capsella rubella Carubv10003520m.g I 0.822
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I 0.850
Eucgr.B02198 Eucalyptus grandis Eucgr.B02198 I 0.790
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I 0.850
EuGene.0200010492 Micromonas sp RCC299 EuGene.0200010492 I 0.822
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I 0.850
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I 0.850
Gorai.004G274100 Gossypium raimondii Gorai.004G274100 I 0.838
Lus10002028.g Linum usitatissimum Lus10002028.g I 0.827
Lus10002900.g Linum usitatissimum Lus10002900.g I 0.850
MDP0000264514 Malus domestica MDP0000264514 I 0.850
MDP0000586302 Malus domestica MDP0000586302 I 0.850
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I 0.850
Pavir.Aa02966 Panicum virgatum Pavir.Aa02966 I 0.840
Pavir.Ab00856 Panicum virgatum Pavir.Ab00856 I 0.789
Pavir.Da00549 Panicum virgatum Pavir.Da00549 I 0.847
Pavir.Db01231 Panicum virgatum Pavir.Db01231 I 0.847
SapurV1A.0043s0530 Salix purpurea SapurV1A.0043s0530 I 0.832
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I 0.846
SapurV1A.3812s0010 Salix purpurea SapurV1A.3812s0010 I 0.813
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I 0.850
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I 0.850
PK17235.1 Cannabis sativa PK17235.1 I 0.850
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I 0.845
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I 0.845
MDP0000279891 Malus domestica MDP0000279891 N 0.789