Pavir.Ab00856 (Panicum virgatum)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Pavir.Ab00856 T072309_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q39895_SOYBN
M10048_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_01 		0.789 0.873
Q39895_SOYBN
M10049_2.00 		Glycine max Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$STF1_02 		0.789 0.873
HY5
M06790_2.00 		Arabidopsis thaliana
DNHGVTGACGTSDMN
NKHSACGTCABCDNH		 Dap-seq
OMalley et al.(2016)
HY5_colamp_v3a 		0.789 0.836
HY5
M08407_2.00 		Arabidopsis thaliana
NNHGMCACGTGKCDNN
NNHGMCACGTGKCDNN		 ChIP-chip
Mathelier et al.(2014)
MA0551.1 		0.789 0.836
HY5
M09919_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HY5_01 		0.789 0.836
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab00856.1.p bZIP 1 55

Links

Other bZIP family TFs
Other Panicum virgatum TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF019 Arabidopsis thaliana AT1G22810 D 0.000
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.000
mgf010891m Mimulus guttatus mgf010891m I 0.000
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.000
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.000
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.000
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.000
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.000
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.000
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.000
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.000
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.000
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.000
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.000
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.000
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.000
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.000
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.000
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.000
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.000
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.000
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.000
ERF020 Arabidopsis thaliana AT1G71520 I 0.000
Bo2g072950 Brassica oleracea Bo2g072950 I 0.000
Bo5g038890 Brassica oleracea Bo5g038890 I 0.000
Bo6g113060 Brassica oleracea Bo6g113060 I 0.000
Bo7g057680 Brassica oleracea Bo7g057680 I 0.000
Bra007974 Brassica rapa Bra007974 I 0.000
Bra012345 Brassica rapa Bra012345 I 0.000
Bra016133 Brassica rapa Bra016133 I 0.000
Bra024539 Brassica rapa Bra024539 I 0.000
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.000
MTR_5g008790 Medicago truncatula MTR_5g008790 I 0.000
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.000
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.000
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.000
TCM_036224 Theobroma cacao TCM_036224 I 0.000
Ca_15055 Cicer arietinum Ca_15055 I 0.000
Cla012182 Citrullus lanatus Cla012182 I 0.000
29938.m000611 Ricinus communis 29938.m000611 I 0.000
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.000