Pavir.J11927 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J11927 T143409_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J11927.1.p C2H2 ZF 299 320
Pavir.J11927.1.p C2H2 ZF 319 345

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA000452 Oryza indica BGIOSGA000452 N 0.803
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.762
Bo5g081360 Brassica oleracea Bo5g081360 N 0.758
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N 0.803
BRADI2G55540 Brachypodium distachyon BRADI2G55540 N 0.803
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.762
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.768
F775_11193 Aegilops tauschii F775_11193 N 0.803
F775_14972 Aegilops tauschii F775_14972 N 0.768
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.756
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.756
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.771
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.771
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.771
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.771
GRMZM2G000836 Zea mays GRMZM2G000836 N 0.803
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.762
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.768
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.762
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N 0.761
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.762
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N 0.761
LPERR01G32600 Leersia perrieri LPERR01G32600 N 0.803
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.762
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.762
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.768
OB05G26090 Oryza brachyantha OB05G26090 N 0.803
OB08G26650 Oryza brachyantha OB08G26650 N 0.762
OBART01G37960 Oryza barthii OBART01G37960 N 0.803
OBART02G07320 Oryza barthii OBART02G07320 N 0.763
OBART08G19670 Oryza barthii OBART08G19670 N 0.762
OGLUM01G42130 Oryza glumaepatula OGLUM01G42130 N 0.803
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.803
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.762
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.762
OMERI01G34920 Oryza meridionalis OMERI01G34920 N 0.803
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.762
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.762
ONIVA04G25710 Oryza nivara ONIVA04G25710 N 0.803
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.762
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.762
OPUNC01G36780 Oryza punctata OPUNC01G36780 N 0.803
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.762
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.762
ORGLA01G0317700 Oryza glaberrima ORGLA01G0317700 N 0.803
ORGLA02G0068500 Oryza glaberrima ORGLA02G0068500 N 0.763
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.762
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.762
ORUFI01G41290 Oryza rufipogon ORUFI01G41290 N 0.803
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.762
OS01G0859100 Oryza sativa OS01G0859100 N 0.803
OS08G0504000 Oryza sativa OS08G0504000 N 0.762
OS09G0485600 Oryza sativa OS09G0485600 N 0.762
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.762
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.771
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.781
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.771
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.771
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.756
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.756
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.771
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.768
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.762
Sb09g021850 Sorghum bicolor Sb09g021850 N 0.827
Si013819m.g Setaria italica Si013819m.g N 0.762
Si022296m.g Setaria italica Si022296m.g N 0.827
Si029897m.g Setaria italica Si029897m.g N 0.768
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.762
TCM_011858 Theobroma cacao TCM_011858 N 0.756
TCM_041441 Theobroma cacao TCM_041441 N 0.771
TRAES3BF099700020CFD_g Triticum aestivum TRAES3BF099700020CFD_g N 0.803
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.768
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.768
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.768
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.768
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.771
Ca_07051 Cicer arietinum Ca_07051 N 0.771
Ca_16482 Cicer arietinum Ca_16482 N 0.766
Ca_24699 Cicer arietinum Ca_24699 N 0.756
Cla000184 Citrullus lanatus Cla000184 N 0.758
Pm001374 Prunus mume Pm001374 N 0.771
Pm029018 Prunus mume Pm029018 N 0.756
30055.m001542 Ricinus communis 30055.m001542 N 0.771
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.771
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.771
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.758
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.771
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.771
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.756
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.771
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.771
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.766
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.771
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.782
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.762
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.771
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.771
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.771
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.771
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.771
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.771
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.756
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.762
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.756
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.762
MDP0000131949 Malus domestica MDP0000131949 N 0.771
MDP0000300013 Malus domestica MDP0000300013 N 0.771
MDP0000303483 Malus domestica MDP0000303483 N 0.756
MDP0000899280 Malus domestica MDP0000899280 N 0.756
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.771
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.766
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.768
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.762
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.762
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.771
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.771
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.776
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.776
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N 0.756
PK05257.1 Cannabis sativa PK05257.1 N 0.771
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.756
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.771