CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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lin28b
(
Xenopus tropicalis
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00313 (CSD)
IPR002059
XB-GENE-1218969
T165580_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.909
0.909
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.909
0.909
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI67886
CSD
33
105
GSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGFESLRVTGP
Links
Other
CSD
family TFs
Other
Xenopus tropicalis
TFs
134 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy