CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

LCUP017774 *(Lucilia cuprina)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	LCUP017774	T189551_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
croc M03744_2.00	Drosophila melanogaster	WRYGTMAACAH	DTGTTKACRYW	SELEX Nitta et al.(2015) croc_1	0.834	0.977
croc M10571_2.00	Drosophila melanogaster	HWNARTAAATAKNNNV	BNNNMTATTTAYYNWD	Transfac Matys et al.(2006) I$CROC_01	0.834	0.977
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.796	0.895
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.796	0.895
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.796	0.895
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.796	0.895
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.796	0.895
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.796	0.895
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.796	0.895
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.796	0.895
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.796	0.895
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.796	0.895
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.796	0.895
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.796	0.884
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.796	0.884
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.796	0.884
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.796	0.884
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.796	0.884
FOXC1 M00254_2.00	Homo sapiens	RRTAAACANN	NNTGTTTAYY	PBM Barrera et al.(2016) FOXC1_I126M	0.772	0.884
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.764	0.872
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.764	0.872
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.764	0.872
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.764	0.872
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.764	0.872
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.764	0.872
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.764	0.872
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.764	0.872
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.764	0.872
foxe3 M01228_2.00	Xenopus tropicalis	WNNVHHMAYW	WRTKDDBNNW	PBM Lambert et al.(2019) pTH9824	0.712	0.698
Foxl1 M00164_2.00	Mus musculus	NNNRTMAAYA	TRTTKAYNNN	PBM Badis et al.(2009) Foxl1_2809	0.706	0.756
FOXL1 M03034_2.00	Homo sapiens	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) FOXL1_1	0.706	0.744
FOXL1 M03035_2.00	Homo sapiens	NRTAAAYAAAYAN	NTRTTTRTTTAYN	SELEX Jolma et al.(2013) FOXL1_2	0.706	0.744
FOXL1 M10558_2.00	Homo sapiens	DHNVHATAAAYAHNNN	NNNDTRTTTATDBNDH	Transfac Matys et al.(2006) V$FREAC7_01	0.706	0.744
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.701	0.663
FOXE1 M04845_2.00	Homo sapiens	BVYTAWRYAAACADN	NHTGTTTRYWTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_HT-SELEX	0.694	0.628
FOXE1 M04846_2.00	Homo sapiens	BVYTAARYAAACAWH	DWTGTTTRYTTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_Methyl-HT-SELEX	0.694	0.628
FOXL2 M04847_2.00	Homo sapiens	NVBGHMAACAH	DTGTTKDCVBN	SELEX Yin et al.(2017) FOXL2_FL_HT-SELEX	0.679	0.663
Foxl2 M09112_2.00	Mus musculus	DWDWRTAAACA	TGTTTAYWHWH	Misc Kulakovskiy et al.(2013) FOXL2_MOUSE.H11MO.0.C	0.679	0.663
FOXL2 M10560_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXL2_Q2	0.679	0.663
FOXL2 M10561_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXL2_Q5	0.679	0.663
FOXL2 M04848_2.00	Homo sapiens	HVCGWMAACAH	DTGTTKWCGBD	SELEX Yin et al.(2017) FOXL2_FL_Methyl-HT-SELEX	0.679	0.663
FOXD3 M03044_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD3_1	0.678	0.674
FOXD3 M03045_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD3_2	0.678	0.674
FOXD3 M04855_2.00	Homo sapiens	VHWRHRTAMACW	WGTKTAYDYWDB	SELEX Yin et al.(2017) FOXD3_eDBD_HT-SELEX	0.678	0.674
Foxd3 M09114_2.00	Mus musculus	DVNWRDRNAAACAVN	NBTGTTTNYHYWNBH	Misc Kulakovskiy et al.(2013) FOXD3_MOUSE.H11MO.0.C	0.678	0.674
FOXD3 M10565_2.00	Homo sapiens	RADHAAAYAWWH	DWWTRTTTDHTY	Transfac Matys et al.(2006) V$FOXD3_01	0.678	0.674
FOXD3 M10566_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HFH2_Q5	0.678	0.674
FOXD3 M04856_2.00	Homo sapiens	VYWRHRTAAACW	WGTTTAYDYWRB	SELEX Yin et al.(2017) FOXD3_eDBD_Methyl-HT-SELEX	0.678	0.674
let-381 M00664_2.00	Caenorhabditis elegans	RTAAACAW	WTGTTTAY	PBM Narasimhan et al.(2015) pTH9057	0.672	0.547
fd59A M03739_2.00	Drosophila melanogaster	HWAWRTAAACAWW	WWTGTTTAYWTWD	SELEX Nitta et al.(2015) fd59A_1	0.670	0.663
fd59A M03740_2.00	Drosophila melanogaster	WWAVAATAACAHN	NDTGTTATTBTWW	SELEX Nitta et al.(2015) fd59A_2	0.670	0.663
fd59A M03741_2.00	Drosophila melanogaster	YWRWRTAAAYAHH	DDTRTTTAYWYWR	SELEX Nitta et al.(2015) fd59A_3	0.670	0.663
fd59A M03742_2.00	Drosophila melanogaster	MWACAAYAAYAHW	WDTRTTRTTGTWK	SELEX Nitta et al.(2015) fd59A_4	0.670	0.663
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.668	0.651
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.668	0.651
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.668	0.651
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.668	0.651
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.668	0.651
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.668	0.651
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.668	0.651
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.668	0.651
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.668	0.640
slp2 M03738_2.00	Drosophila melanogaster	NNTRTTTACAACAHN	NDTGTTGTAAAYANN	SELEX Nitta et al.(2015) slp2_1	0.664	0.698
slp2 M06196_2.00	Drosophila melanogaster	RTAAACAV	BTGTTTAY	B1H Zhu et al.(2011) slp2_SANGER_5_FBgn0004567	0.664	0.698
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
LCUP017774-PA	Forkhead	71	160	KPPYSYIALIAMAIQNSGDKKVTLNGIYQYIMERFPYYRDNKQGWQNSIRHNLSLNECFVKVARDDKKPGKGSYWTLDPDSYNMFDNGSF

Links
Other Forkhead family TFs
Other *Lucilia cuprina* TFs

827 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CY34DRAFT_810312	Suillus luteus	CY34DRAFT_810312	I
DACRYDRAFT_23197	Dacryopinax sp	DACRYDRAFT_23197	I
GLOTRDRAFT_99857	Gloeophyllum trabeum	GLOTRDRAFT_99857	I
HYDPIDRAFT_138070	Hydnomerulius pinastri	HYDPIDRAFT_138070	I
M378DRAFT_77996	Amanita muscaria	M378DRAFT_77996	I
M404DRAFT_63984	Pisolithus tinctorius	M404DRAFT_63984	I
MSY001_2636	Malassezia sympodialis	MSY001_2636	I
PaG_04789	Pseudozyma aphidis	PaG_04789	I
PAN0_004d2231	Pseudozyma antarctica	PAN0_004d2231	I
PAXRUDRAFT_828263	Paxillus rubicundulus	PAXRUDRAFT_828263	I
PICST_23779	Scheffersomyces stipitis	PICST_23779	I
PSEUBRA_SCAF4g05002	Pseudozyma brasiliensis	PSEUBRA_SCAF4g05002	I
UHOR_03854	Ustilago hordei	UHOR_03854	I
UM02364	Ustilago maydis	UM02364	I
gww1.1.1.1342.1	Pichia stipitis	gww1.1.1.1342.1	I
SNAPOd2T00002710001	Oikopleura dioica	SNAPOd2T00002710001	I
Hba_16915	Heterorhabditis bacteriophora	Hba_16915	I
L596_g21045	Steinernema carpocapsae	L596_g21045	I
L892_g13433	Steinernema scapterisci	L892_g13433	I
PEQ_0000291001	Parascaris equorum	PEQ_0000291001	I
CpipJ_CPIJ016883	Culex pipiens	CpipJ_CPIJ016883	N
WUBG_00348	Wuchereria bancrofti	WUBG_00348	N
WUBG_03167	Wuchereria bancrofti	WUBG_03167	N
Bm2393	Brugia malayi	Bm2393	N
Bm7765	Brugia malayi	Bm7765	N
Bm9369	Brugia malayi	Bm9369	N
CBG11867	Caenorhabditis briggsae	CBG11867	N
CBG18873	Caenorhabditis briggsae	CBG18873	N
CBN07735	Caenorhabditis brenneri	CBN07735	N
CBN15844	Caenorhabditis brenneri	CBN15844	N
CBN31697	Caenorhabditis brenneri	CBN31697	N
CJA03316	Caenorhabditis japonica	CJA03316	N
CJA17191	Caenorhabditis japonica	CJA17191	N
CJA30740	Caenorhabditis japonica	CJA30740	N
CPIJ016883	Culex quinquefasciatus	CPIJ016883	N
CRE14258	Caenorhabditis remanei	CRE14258	N
CRE28315	Caenorhabditis remanei	CRE28315	N
EFV56090	Trichinella spiralis	EFV56090	N
EFV56095	Trichinella spiralis	EFV56095	N
ENSCING00000002208	Ciona intestinalis	ENSCING00000002208	N
ENSCING00000003572	Ciona intestinalis	ENSCING00000003572	N
ENSCSAVG00000006236	Ciona savignyi	ENSCSAVG00000006236	N
ENSCSAVG00000009396	Ciona savignyi	ENSCSAVG00000009396	N
HMEL006186	Heliconius melpomene	HMEL006186	N
ISCW005293	Ixodes scapularis	ISCW005293	N
LOAG_11340	Loa loa	LOAG_11340	N
LOAG_15875	Loa loa	LOAG_15875	N
LotgiG176647	Lottia gigantea	LotgiG176647	N
NEMVEDRAFT_v1g127783	Nematostella vectensis	NEMVEDRAFT_v1g127783	N
SMAR009325	Strigamia maritima	SMAR009325	N
SPU_025140	Strongylocentrotus purpuratus	SPU_025140	N
TCM_014800	Theobroma cacao	TCM_014800	N
tetur21g01330	Tetranychus urticae	tetur21g01330	N
pbrm-1	Caenorhabditis elegans	WBGene00007042	N
WBGene00239172	Onchocerca volvulus	WBGene00239172	N
fgenesh2_pg.scaffold_1690000001	Branchiostoma floridae	fgenesh2_pg.scaffold_1690000001	N
mgf006762m	Mimulus guttatus	mgf006762m	N
Sakowv30031460m.g	Saccoglossus kowalevskii	Sakowv30031460m.g	N
Minc06622	Meloidogyne incognita	Minc06622	N
BGLB013626	Biomphalaria glabrata	BGLB013626	N
ACAC_0000973801	Angiostrongylus cantonensis	ACAC_0000973801	N
ANCCAN_09463	Ancylostoma caninum	ANCCAN_09463	N
ANCCEY_15064	Ancylostoma ceylanicum	ANCCEY_15064	N
ANCCEY_15918	Ancylostoma ceylanicum	ANCCEY_15918	N
ANCDUO_06783	Ancylostoma duodenale	ANCDUO_06783	N
ASIM_0001613301	Anisakis simplex	ASIM_0001613301	N
ASU_00939	Ascaris suum	ASU_00939	N
BTMF_0001478401	Brugia timori	BTMF_0001478401	N
BTMF_0001523401	Brugia timori	BTMF_0001523401	N
BXY_0575000	Bursaphelenchus xylophilus	BXY_0575000	N
D917_05046	Trichinella nativa	D917_05046	N
D917_05048	Trichinella nativa	D917_05048	N
D918_05288	Trichuris suis	D918_05288	N
D918_06015	Trichuris suis	D918_06015	N
DICVIV_00270	Dictyocaulus viviparus	DICVIV_00270	N
DICVIV_02621	Dictyocaulus viviparus	DICVIV_02621	N
EEL_0000724001	Elaeophora elaphi	EEL_0000724001	N
GPUH_0001659301	Gongylonema pulchrum	GPUH_0001659301	N
HCOI00076900	Haemonchus contortus	HCOI00076900	N
HCOI01215700	Haemonchus contortus	HCOI01215700	N
L596_g8243	Steinernema carpocapsae	L596_g8243	N
L889_g13125	Steinernema feltiae	L889_g13125	N
L892_g19322	Steinernema scapterisci	L892_g19322	N
L893_g19156	Steinernema glaseri	L893_g19156	N
L898_g14011	Steinernema monticolum	L898_g14011	N
MhA1_Contig1224.frz3.gene1	Meloidogyne hapla	MhA1_Contig1224.frz3.gene1	N
MhA1_Contig232.frz3.gene23	Meloidogyne hapla	MhA1_Contig232.frz3.gene23	N
nAv.1.0.1.g05839	Acanthocheilonema viteae	nAv.1.0.1.g05839	N
nDi.2.2.2.g01867	Dirofilaria immitis	nDi.2.2.2.g01867	N
nDi.2.2.2.g06671	Dirofilaria immitis	nDi.2.2.2.g06671	N
nDi.2.2.2.g10298	Dirofilaria immitis	nDi.2.2.2.g10298	N
NECAME_01599	Necator americanus	NECAME_01599	N
NECAME_06830	Necator americanus	NECAME_06830	N
nLs.2.1.2.g07200	Litomosoides sigmodontis	nLs.2.1.2.g07200	N
nLs.2.1.2.g08566	Litomosoides sigmodontis	nLs.2.1.2.g08566	N
nOo.2.0.1.g03638	Onchocerca ochengi	nOo.2.0.1.g03638	N
nOo.2.0.1.g07918	Onchocerca ochengi	nOo.2.0.1.g07918	N
OESDEN_01314	Oesophagostomum dentatum	OESDEN_01314	N
OFLC_0000194401	Onchocerca flexuosa	OFLC_0000194401	N
PEQ_0000212901	Parascaris equorum	PEQ_0000212901	N
PTRK_0001310900	Parastrongyloides trichosuri	PTRK_0001310900	N
RSKR_0000607700	Rhabditophanes kr3021	RSKR_0000607700	N
scaffold517-EXSNAP2012.7	Pristionchus exspectatus	scaffold517-EXSNAP2012.7	N
SMUV_0000135001	Syphacia muris	SMUV_0000135001	N
SPAL_0001274100	Strongyloides papillosus	SPAL_0001274100	N
SSTP_0000878000	Strongyloides stercoralis	SSTP_0000878000	N
SSTP_0001127200	Strongyloides stercoralis	SSTP_0001127200	N
SVE_0827400	Strongyloides venezuelensis	SVE_0827400	N
SVUK_0000363901	Strongylus vulgaris	SVUK_0000363901	N
SVUK_0000686401	Strongylus vulgaris	SVUK_0000686401	N
TCLT_0000189901	Thelazia callipaeda	TCLT_0000189901	N
TELCIR_16246	Teladorsagia circumcincta	TELCIR_16246	N
TMUE_s0089001400	Trichuris muris	TMUE_s0089001400	N
TMUE_s0227000300	Trichuris muris	TMUE_s0227000300	N

LCUP017774 (Lucilia cuprina) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

827 Related TFs

LCUP017774 **(Lucilia cuprina)
Forkhead**