OLONG_026942 (Oryza longistaminata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OLONG_026942 T221538_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.781 0.643
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.664 0.452
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.664 0.452
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.664 0.452
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.664 0.452
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.614 0.571
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_026942-R1 Homeodomain 276 319

Links

Other Homeodomain family TFs
Other Oryza longistaminata TFs

1019 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF019 Arabidopsis thaliana AT1G22810 D 0.000
Ciclev10023345m.g Citrus clementina Ciclev10023345m.g I 0.000
TCM_036224 Theobroma cacao TCM_036224 I 0.000
Cla012182 Citrullus lanatus Cla012182 I 0.000
29938.m000611 Ricinus communis 29938.m000611 I 0.000
cassava8476.m1 Manihot esculenta cassava8476.m1 I 0.000
mgf010891m Mimulus guttatus mgf010891m I 0.000
Bostr.10273s0198 Boechera stricta Bostr.10273s0198 I 0.000
Bostr.12659s0135 Boechera stricta Bostr.12659s0135 I 0.000
Cagra.0114s0023 Capsella grandiflora Cagra.0114s0023 I 0.000
Cagra.2418s0007 Capsella grandiflora Cagra.2418s0007 I 0.000
Carubv10011955m.g Capsella rubella Carubv10011955m.g I 0.000
Carubv10022408m.g Capsella rubella Carubv10022408m.g I 0.000
Ca_15055 Cicer arietinum Ca_15055 I 0.000
Eucgr.F02967 Eucalyptus grandis Eucgr.F02967 I 0.000
evm.TU.supercontig_21.63 Carica papaya evm.TU.supercontig_21.63 I 0.000
Lus10006179.g Linum usitatissimum Lus10006179.g I 0.000
Lus10009468.g Linum usitatissimum Lus10009468.g I 0.000
Lus10041044.g Linum usitatissimum Lus10041044.g I 0.000
orange1.1g045327m.g Citrus sinensis orange1.1g045327m.g I 0.000
SapurV1A.2173s0020 Salix purpurea SapurV1A.2173s0020 I 0.000
SapurV1A.3847s0010 Salix purpurea SapurV1A.3847s0010 I 0.000
SapurV1A.4200s0010 Salix purpurea SapurV1A.4200s0010 I 0.000
Thhalv10009842m.g Eutrema salsugineum Thhalv10009842m.g I 0.000
Thhalv10019510m.g Eutrema salsugineum Thhalv10019510m.g I 0.000
chr2.CM0018.340.nd Lotus japonicus chr2.CM0018.340.nd I 0.000
scaffold_102587.1 Arabidopsis lyrata scaffold_102587.1 I 0.000
ERF020 Arabidopsis thaliana AT1G71520 I 0.000
Bo2g072950 Brassica oleracea Bo2g072950 I 0.000
Bo5g038890 Brassica oleracea Bo5g038890 I 0.000
Bo6g113060 Brassica oleracea Bo6g113060 I 0.000
Bo7g057680 Brassica oleracea Bo7g057680 I 0.000
Bra007974 Brassica rapa Bra007974 I 0.000
Bra012345 Brassica rapa Bra012345 I 0.000
Bra016133 Brassica rapa Bra016133 I 0.000
Bra024539 Brassica rapa Bra024539 I 0.000
fgenesh2_kg.2__1411__AT1G71520.1 Arabidopsis lyrata fgenesh2_kg.2__1411__AT1G71520.1 I 0.000
GLYMA11G01700 Glycine max GLYMA11G01700 I 0.000
POPTR_0019s10220 Populus trichocarpa POPTR_0019s10220 I 0.000
POPTR_0013s10420 Populus trichocarpa POPTR_0013s10420 I 0.000
Cucsa.088640 Cucumis sativus Cucsa.088640 N 0.000
Solyc01g057080.1 Solanum lycopersicum Solyc01g057080.1 N 0.000
BGIOSGA004939 Oryza indica BGIOSGA004939 N 0.000
TRAES3BF106000020CFD_g Triticum aestivum TRAES3BF106000020CFD_g N 0.000
Sb03g042060 Sorghum bicolor Sb03g042060 N 0.000
PRUPE_ppa020605mg Prunus persica PRUPE_ppa020605mg N 0.000
Pm004265 Prunus mume Pm004265 N 0.000
MDP0000932292 Malus domestica MDP0000932292 N 0.000
cassava9593.m1 Manihot esculenta cassava9593.m1 N 0.000
OS01G0885900 Oryza sativa OS01G0885900 N 0.000
gene27062-v1.0-hybrid Fragaria vesca gene27062-v1.0-hybrid N 0.000
PGSC0003DMG400008734 Solanum tuberosum PGSC0003DMG400008734 N 0.000
GLYMA01G44230 Glycine max GLYMA01G44230 N 0.000
Aquca_001_00483 Aquilegia coerulea Aquca_001_00483 N 0.000
OB01G48490 Oryza brachyantha OB01G48490 N 0.000
OGLUM01G43950 Oryza glumaepatula OGLUM01G43950 N 0.000
OMERI01G36600 Oryza meridionalis OMERI01G36600 N 0.000
ONIVA01G44590 Oryza nivara ONIVA01G44590 N 0.000
ORUFI01G43070 Oryza rufipogon ORUFI01G43070 N 0.000