POPTR_0002s15610 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0002s15610 T222482_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.867 0.947
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.867 0.947
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.867 0.947
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.839 0.842
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.839 0.842
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.806 0.789
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.790 0.772
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.790 0.772
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.786 0.789
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.786 0.789
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.786 0.789
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.786 0.789
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.786 0.754
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.786 0.754
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.769 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s15610.1 Homeodomain 117 173

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

617 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH80 Arabidopsis thaliana AT1G35460 D
OS08G0506700 Oryza sativa OS08G0506700 D
AMTR_s00070p00149100 Amborella trichopoda AMTR_s00070p00149100 I
AT2G43140 Arabidopsis thaliana AT2G43140 I
BHLH81 Arabidopsis thaliana AT4G09180 I
BGIOSGA008576 Oryza indica BGIOSGA008576 I
BGIOSGA028963 Oryza indica BGIOSGA028963 I
BGIOSGA031008 Oryza indica BGIOSGA031008 I
Bo3g036400 Brassica oleracea Bo3g036400 I
Bo4g019620 Brassica oleracea Bo4g019620 I
Bo5g085170 Brassica oleracea Bo5g085170 I
Bo6g043840 Brassica oleracea Bo6g043840 I
Bo8g026850 Brassica oleracea Bo8g026850 I
Bra000291 Brassica rapa Bra000291 I
Bra004748 Brassica rapa Bra004748 I
Bra028088 Brassica rapa Bra028088 I
Bra034421 Brassica rapa Bra034421 I
Bra036760 Brassica rapa Bra036760 I
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I
F775_24151 Aegilops tauschii F775_24151 I
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I
fgenesh2_kg.6__2924__AT4G09180.1 Arabidopsis lyrata fgenesh2_kg.6__2924__AT4G09180.1 I
GLYMA08G26110 Glycine max GLYMA08G26110 I
GLYMA10G12150 Glycine max GLYMA10G12150 I
GLYMA20G39220 Glycine max GLYMA20G39220 I
GRMZM2G437481 Zea mays GRMZM2G437481 I
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I
LPERR02G18900 Leersia perrieri LPERR02G18900 I
MLOC_67834 Hordeum vulgare MLOC_67834 I
MTR_3g027650 Medicago truncatula MTR_3g027650 I
MTR_3g028520 Medicago truncatula MTR_3g028520 I
MTR_4g033295 Medicago truncatula MTR_4g033295 I
OB02G30670 Oryza brachyantha OB02G30670 I
OB08G26810 Oryza brachyantha OB08G26810 I
OBART02G23210 Oryza barthii OBART02G23210 I
OBART08G19860 Oryza barthii OBART08G19860 I
OBART09G14660 Oryza barthii OBART09G14660 I
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I
OLONG_009256 Oryza longistaminata OLONG_009256 I
OLONG_017566 Oryza longistaminata OLONG_017566 I
OMERI02G22740 Oryza meridionalis OMERI02G22740 I
OMERI08G16700 Oryza meridionalis OMERI08G16700 I
OMERI09G11370 Oryza meridionalis OMERI09G11370 I
ONIVA02G26110 Oryza nivara ONIVA02G26110 I
ONIVA08G17500 Oryza nivara ONIVA08G17500 I
ONIVA08G22410 Oryza nivara ONIVA08G22410 I
OPUNC02G21170 Oryza punctata OPUNC02G21170 I
OPUNC08G18020 Oryza punctata OPUNC08G18020 I
OPUNC09G13060 Oryza punctata OPUNC09G13060 I
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I
OS09G0487900 Oryza sativa OS09G0487900 I
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I
PGSC0003DMG400022058 Solanum tuberosum PGSC0003DMG400022058 I
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I
PGSC0003DMG400031314 Solanum tuberosum PGSC0003DMG400031314 I
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I
PRUPE_ppa011017mg Prunus persica PRUPE_ppa011017mg I
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I
Sb04g025260 Sorghum bicolor Sb04g025260 I
Sb06g020810 Sorghum bicolor Sb06g020810 I
scaffold_103992.1 Arabidopsis lyrata scaffold_103992.1 I
Si010513m.g Setaria italica Si010513m.g I
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I
Solyc06g065040.2 Solanum lycopersicum Solyc06g065040.2 I
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I
Solyc11g056650.1 Solanum lycopersicum Solyc11g056650.1 I
TCM_005925 Theobroma cacao TCM_005925 I
TCM_020066 Theobroma cacao TCM_020066 I
TCM_024842 Theobroma cacao TCM_024842 I
TCM_036484 Theobroma cacao TCM_036484 I
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I
TRIUR3_26625 Triticum urartu TRIUR3_26625 I
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I
VIT_18s0041g00690 Vitis vinifera VIT_18s0041g00690 I
Ca_26916 Cicer arietinum Ca_26916 I
Cla017792 Citrullus lanatus Cla017792 I
Pm000447 Prunus mume Pm000447 I
Pm004181 Prunus mume Pm004181 I
Pm007619 Prunus mume Pm007619 I
Pm025821 Prunus mume Pm025821 I
29216.m000261 Ricinus communis 29216.m000261 I
30074.m001421 Ricinus communis 30074.m001421 I
30149.m000231 Ricinus communis 30149.m000231 I
30152.m002405 Ricinus communis 30152.m002405 I
cassava13743.valid.m1 Manihot esculenta cassava13743.valid.m1 I
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I
Cucsa.061590 Cucumis sativus Cucsa.061590 I
Cucsa.242910 Cucumis sativus Cucsa.242910 I
e_gw1.34.393.1 Physcomitrella patens e_gw1.34.393.1 I
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I
mgf002701m Mimulus guttatus mgf002701m I
mgf005043m Mimulus guttatus mgf005043m I
mgf016734m Mimulus guttatus mgf016734m I
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I
Aquca_058_00134 Aquilegia coerulea Aquca_058_00134 I
Bostr.1774s0027 Boechera stricta Bostr.1774s0027 I
Bostr.25463s0393 Boechera stricta Bostr.25463s0393 I
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I
Cagra.18223s0002 Capsella grandiflora Cagra.18223s0002 I
Cagra.3706s0004 Capsella grandiflora Cagra.3706s0004 I
Cagra.9781s0002 Capsella grandiflora Cagra.9781s0002 I
Carubv10010050m.g Capsella rubella Carubv10010050m.g I
Carubv10023683m.g Capsella rubella Carubv10023683m.g I
Ciclev10002083m.g Citrus clementina Ciclev10002083m.g I
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I
gene26880-v1.0-hybrid Fragaria vesca gene26880-v1.0-hybrid I
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I
Gorai.013G138300 Gossypium raimondii Gorai.013G138300 I
Lus10021023.g Linum usitatissimum Lus10021023.g I
Lus10031255.g Linum usitatissimum Lus10031255.g I
Lus10031826.g Linum usitatissimum Lus10031826.g I
MDP0000180376 Malus domestica MDP0000180376 I
MDP0000269890 Malus domestica MDP0000269890 I
MDP0000273574 Malus domestica MDP0000273574 I
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I
orange1.1g023215m.g Citrus sinensis orange1.1g023215m.g I
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I
Pavir.J08536 Panicum virgatum Pavir.J08536 I
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I
SapurV1A.0071s0010 Salix purpurea SapurV1A.0071s0010 I
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I
SapurV1A.0391s0050 Salix purpurea SapurV1A.0391s0050 I
SapurV1A.0402s0180 Salix purpurea SapurV1A.0402s0180 I
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I
SapurV1A.0690s0120 Salix purpurea SapurV1A.0690s0120 I
SapurV1A.1647s0020 Salix purpurea SapurV1A.1647s0020 I
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I
Thhalv10028883m.g Eutrema salsugineum Thhalv10028883m.g I
PK06301.1 Cannabis sativa PK06301.1 I
PK07850.1 Cannabis sativa PK07850.1 I
PK18038.1 Cannabis sativa PK18038.1 I
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I