gene29752-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene29752-v1.0-hybrid T228646_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.855 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna29752.1-v1.0-hybrid Homeodomain 30 86

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400004714 Solanum tuberosum PGSC0003DMG400004714 I 0.000
TCM_008214 Theobroma cacao TCM_008214 I 0.671
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.000
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.000
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.000
e_gw.418.31.1 Branchiostoma floridae e_gw.418.31.1 N 0.000
SVUK_0001065601 Strongylus vulgaris SVUK_0001065601 N 0.000
OESDEN_18963 Oesophagostomum dentatum OESDEN_18963 N 0.000
HNAJ_0000597801 Hymenolepis nana HNAJ_0000597801 N 0.000
DICVIV_12877 Dictyocaulus viviparus DICVIV_12877 N 0.000
D915_07707 Fasciola hepatica D915_07707 N 0.000
LjSGA_012738.1 Lotus japonicus LjSGA_012738.1 N 0.000
pou4f2.L Xenopus laevis XB-GENE-866583 N 0.000
gene14635-v1.0-hybrid Fragaria vesca gene14635-v1.0-hybrid N 0.000
Bo9g006410 Brassica oleracea Bo9g006410 N 0.000
cassava31027.valid.m1 Manihot esculenta cassava31027.valid.m1 N 0.000
Pm012761 Prunus mume Pm012761 N 0.000
Myotis_brandtii_POU5F1_10022641 Myotis brandtii Myotis_brandtii_POU5F1_10022641 N 0.000
Cmyd_10015262 Chelonia mydas Cmyd_10015262 N 0.000
scaffold_603934.1 Arabidopsis lyrata scaffold_603934.1 N 0.000
ORUFI05G12600 Oryza rufipogon ORUFI05G12600 N 0.000
GLYMA08G38930 Glycine max GLYMA08G38930 N 0.000
ENSDNOG00000038094 Dasypus novemcinctus ENSDNOG00000038094 N 0.000
CABZ01080370.1 Danio rerio ENSDARG00000102550 N 0.000