D918_01226 (Trichuris suis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 D918_01226 T233540_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 0.982
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 0.982
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 0.982
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.965
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 0.947
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 0.947
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 0.947
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 0.947
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 0.947
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 0.947
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 0.947
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 0.947
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 0.947
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 0.947
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 0.947
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 0.947
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 0.947
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 0.947
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.947
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.965
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.965
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.965
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.965
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.965
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.930
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.930
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.561
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D918_01226 Homeodomain 223 282

Links

Other Homeodomain family TFs
Other Trichuris suis TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00003p00266720 Amborella trichopoda AMTR_s00003p00266720 N
VAL1 Arabidopsis thaliana AT2G30470 N
VAL2 Arabidopsis thaliana AT4G32010 N
BGIOSGA023709 Oryza indica BGIOSGA023709 N
BGIOSGA025947 Oryza indica BGIOSGA025947 N
Bo1g024250 Brassica oleracea Bo1g024250 N
Bo3g024640 Brassica oleracea Bo3g024640 N
Bo4g058460 Brassica oleracea Bo4g058460 N
Bo4g173060 Brassica oleracea Bo4g173060 N
Bo7g115560 Brassica oleracea Bo7g115560 N
Bo7g115570 Brassica oleracea Bo7g115570 N
Bra013535 Brassica rapa Bra013535 N
Bra018313 Brassica rapa Bra018313 N
Bra021635 Brassica rapa Bra021635 N
Bra022801 Brassica rapa Bra022801 N
Bra023968 Brassica rapa Bra023968 N
BRADI1G17680 Brachypodium distachyon BRADI1G17680 N
BRADI1G24720 Brachypodium distachyon BRADI1G24720 N
F775_30051 Aegilops tauschii F775_30051 N
F775_32613 Aegilops tauschii F775_32613 N
GLYMA01G32810 Glycine max GLYMA01G32810 N
GLYMA02G40280 Glycine max GLYMA02G40280 N
GLYMA03G04330 Glycine max GLYMA03G04330 N
GLYMA11G31234 Glycine max GLYMA11G31234 N
GLYMA13G31970 Glycine max GLYMA13G31970 N
GLYMA14G38492 Glycine max GLYMA14G38492 N
GLYMA15G07350 Glycine max GLYMA15G07350 N
GLYMA18G05840 Glycine max GLYMA18G05840 N
GRMZM2G008356 Zea mays GRMZM2G008356 N
GRMZM2G158162 Zea mays GRMZM2G158162 N
GRMZM2G172621 Zea mays GRMZM2G172621 N
GSMUA_Achr4G23790_001 Musa acuminata GSMUA_Achr4G23790_001 N
GSMUA_Achr5G27930_001 Musa acuminata GSMUA_Achr5G27930_001 N
GSMUA_Achr7G00120_001 Musa acuminata GSMUA_Achr7G00120_001 N
GSMUA_Achr8G01750_001 Musa acuminata GSMUA_Achr8G01750_001 N
GSMUA_Achr8G03800_001 Musa acuminata GSMUA_Achr8G03800_001 N
LPERR07G16110 Leersia perrieri LPERR07G16110 N
LPERR07G23240 Leersia perrieri LPERR07G23240 N
MLOC_36861 Hordeum vulgare MLOC_36861 N
MLOC_4657 Hordeum vulgare MLOC_4657 N
MTR_2g011940 Medicago truncatula MTR_2g011940 N
MTR_3g467380 Medicago truncatula MTR_3g467380 N
MTR_4g028130 Medicago truncatula MTR_4g028130 N
MTR_5g075410 Medicago truncatula MTR_5g075410 N
MTR_7g073240 Medicago truncatula MTR_7g073240 N
OB07G31850 Oryza brachyantha OB07G31850 N
OBART07G18780 Oryza barthii OBART07G18780 N
OBART07G26400 Oryza barthii OBART07G26400 N
OGLUM07G18530 Oryza glumaepatula OGLUM07G18530 N
OGLUM07G26430 Oryza glumaepatula OGLUM07G26430 N
OLONG_008212 Oryza longistaminata OLONG_008212 N
OLONG_013183 Oryza longistaminata OLONG_013183 N
OMERI07G15550 Oryza meridionalis OMERI07G15550 N
OMERI07G23020 Oryza meridionalis OMERI07G23020 N
ONIVA07G17160 Oryza nivara ONIVA07G17160 N
ONIVA07G26110 Oryza nivara ONIVA07G26110 N
OPUNC07G17640 Oryza punctata OPUNC07G17640 N
OPUNC07G24850 Oryza punctata OPUNC07G24850 N
ORGLA07G0151800 Oryza glaberrima ORGLA07G0151800 N
ORGLA07G0207500 Oryza glaberrima ORGLA07G0207500 N
ORUFI07G19520 Oryza rufipogon ORUFI07G19520 N
ORUFI07G27410 Oryza rufipogon ORUFI07G27410 N
OS07G0563350 Oryza sativa OS07G0563350 N
OS07G0679700 Oryza sativa OS07G0679700 N
POPTR_0004s03530 Populus trichocarpa POPTR_0004s03530 N
POPTR_0006s10880 Populus trichocarpa POPTR_0006s10880 N
POPTR_0011s04340 Populus trichocarpa POPTR_0011s04340 N
POPTR_0013s15330 Populus trichocarpa POPTR_0013s15330 N
POPTR_0016s14350 Populus trichocarpa POPTR_0016s14350 N
POPTR_0019s15070 Populus trichocarpa POPTR_0019s15070 N
PRUPE_ppa001220mg Prunus persica PRUPE_ppa001220mg N
PRUPE_ppa001229mg Prunus persica PRUPE_ppa001229mg N
PRUPE_ppa001234mg Prunus persica PRUPE_ppa001234mg N
Sb02g036430 Sorghum bicolor Sb02g036430 N
Sb02g043000 Sorghum bicolor Sb02g043000 N
HSI2 Arabidopsis lyrata scaffold_401535.1 N
HSL1 Arabidopsis lyrata scaffold_700997.1 N
SELMODRAFT_451626 Selaginella moellendorffii SELMODRAFT_451626 N
SELMODRAFT_451631 Selaginella moellendorffii SELMODRAFT_451631 N
SELMODRAFT_451634 Selaginella moellendorffii SELMODRAFT_451634 N
SELMODRAFT_451635 Selaginella moellendorffii SELMODRAFT_451635 N
Si028829m.g Setaria italica Si028829m.g N
Si028834m.g Setaria italica Si028834m.g N
Solyc02g079020.2 Solanum lycopersicum Solyc02g079020.2 N
Solyc06g082520.2 Solanum lycopersicum Solyc06g082520.2 N
Solyc10g075030.1 Solanum lycopersicum Solyc10g075030.1 N
TCM_019701 Theobroma cacao TCM_019701 N
TCM_029976 Theobroma cacao TCM_029976 N
TCM_042290 Theobroma cacao TCM_042290 N
Traes_2AS_C4FD8E351 Triticum aestivum Traes_2AS_C4FD8E351 N
Traes_2AS_F4CEC9849 Triticum aestivum Traes_2AS_F4CEC9849 N
Traes_2BS_5B00A8C50 Triticum aestivum Traes_2BS_5B00A8C50 N
Traes_2BS_A61094919 Triticum aestivum Traes_2BS_A61094919 N
Traes_2DS_3E4E3BEFC Triticum aestivum Traes_2DS_3E4E3BEFC N
Traes_2DS_B1C947D2B Triticum aestivum Traes_2DS_B1C947D2B N
TRIUR3_04238 Triticum urartu TRIUR3_04238 N
VAL3 Vitis vinifera VIT_00s0181g00260 N
VIT_06s0004g08100 Vitis vinifera VIT_06s0004g08100 N
HSL1 Vitis vinifera VIT_08s0058g01300 N
Ca_00244 Cicer arietinum Ca_00244 N
Ca_08924 Cicer arietinum Ca_08924 N
Ca_15659 Cicer arietinum Ca_15659 N
Ca_23185 Cicer arietinum Ca_23185 N
Cla008225 Citrullus lanatus Cla008225 N
Cla018330 Citrullus lanatus Cla018330 N
Pm000247 Prunus mume Pm000247 N
Pm003031 Prunus mume Pm003031 N
Pm009906 Prunus mume Pm009906 N
29915.m000469 Ricinus communis 29915.m000469 N
29917.m001969 Ricinus communis 29917.m001969 N
29976.m000497 Ricinus communis 29976.m000497 N
cassava13133.valid.m1 Manihot esculenta cassava13133.valid.m1 N
cassava25238.valid.m1 Manihot esculenta cassava25238.valid.m1 N
cassava39646.m1 Manihot esculenta cassava39646.m1 N
cassava41301.m1 Manihot esculenta cassava41301.m1 N
Cucsa.045980 Cucumis sativus Cucsa.045980 N
Cucsa.111990 Cucumis sativus Cucsa.111990 N
Cucsa.177010 Cucumis sativus Cucsa.177010 N
mgf007363m Mimulus guttatus mgf007363m N
mgf007846m Mimulus guttatus mgf007846m N
mgf013365m Mimulus guttatus mgf013365m N
mgf024907m Mimulus guttatus mgf024907m N
Aquca_008_00005 Aquilegia coerulea Aquca_008_00005 N
Aquca_045_00208 Aquilegia coerulea Aquca_045_00208 N
Aquca_063_00016 Aquilegia coerulea Aquca_063_00016 N
Bostr.10689s0100 Boechera stricta Bostr.10689s0100 N
Bostr.24513s0191 Boechera stricta Bostr.24513s0191 N
Bostr.7867s1055 Boechera stricta Bostr.7867s1055 N
Cagra.0567s0011 Capsella grandiflora Cagra.0567s0011 N
Cagra.12385s0007 Capsella grandiflora Cagra.12385s0007 N
Cagra.3519s0007 Capsella grandiflora Cagra.3519s0007 N
Carubv10004192m.g Capsella rubella Carubv10004192m.g N
Carubv10004194m.g Capsella rubella Carubv10004194m.g N
Carubv10022654m.g Capsella rubella Carubv10022654m.g N
Ciclev10000225m.g Citrus clementina Ciclev10000225m.g N
Ciclev10011039m.g Citrus clementina Ciclev10011039m.g N
Ciclev10014219m.g Citrus clementina Ciclev10014219m.g N
Eucgr.B04027 Eucalyptus grandis Eucgr.B04027 N
Eucgr.E03465 Eucalyptus grandis Eucgr.E03465 N
Eucgr.E03467 Eucalyptus grandis Eucgr.E03467 N
Eucgr.F02704 Eucalyptus grandis Eucgr.F02704 N
Eucgr.L01473 Eucalyptus grandis Eucgr.L01473 N
evm.TU.supercontig_0.91 Carica papaya evm.TU.supercontig_0.91 N
evm.TU.supercontig_2.296 Carica papaya evm.TU.supercontig_2.296 N
gene13877-v1.0-hybrid Fragaria vesca gene13877-v1.0-hybrid N
gene28098-v1.0-hybrid Fragaria vesca gene28098-v1.0-hybrid N
gene30690-v1.0-hybrid Fragaria vesca gene30690-v1.0-hybrid N
Gorai.003G152700 Gossypium raimondii Gorai.003G152700 N
Gorai.005G004300 Gossypium raimondii Gorai.005G004300 N
Gorai.009G173100 Gossypium raimondii Gorai.009G173100 N
Gorai.011G022400 Gossypium raimondii Gorai.011G022400 N
Gorai.011G127500 Gossypium raimondii Gorai.011G127500 N
Lus10018440.g Linum usitatissimum Lus10018440.g N
Lus10022741.g Linum usitatissimum Lus10022741.g N
Lus10025142.g Linum usitatissimum Lus10025142.g N
Lus10025226.g Linum usitatissimum Lus10025226.g N
MDP0000127640 Malus domestica MDP0000127640 N
MDP0000229344 Malus domestica MDP0000229344 N
MDP0000267885 Malus domestica MDP0000267885 N
MDP0000274788 Malus domestica MDP0000274788 N
orange1.1g002489m.g Citrus sinensis orange1.1g002489m.g N
orange1.1g002708m.g Citrus sinensis orange1.1g002708m.g N
orange1.1g039386m.g Citrus sinensis orange1.1g039386m.g N
Pavir.Ba00225 Panicum virgatum Pavir.Ba00225 N
Pavir.Ba00654 Panicum virgatum Pavir.Ba00654 N
Pavir.Bb03074 Panicum virgatum Pavir.Bb03074 N
Pavir.Bb03754 Panicum virgatum Pavir.Bb03754 N
SapurV1A.0028s0060 Salix purpurea SapurV1A.0028s0060 N
SapurV1A.0044s0150 Salix purpurea SapurV1A.0044s0150 N
SapurV1A.0065s0470 Salix purpurea SapurV1A.0065s0470 N
SapurV1A.0215s0260 Salix purpurea SapurV1A.0215s0260 N
SapurV1A.0914s0080 Salix purpurea SapurV1A.0914s0080 N
SapurV1A.1353s0040 Salix purpurea SapurV1A.1353s0040 N
Thhalv10016263m.g Eutrema salsugineum Thhalv10016263m.g N
Thhalv10024481m.g Eutrema salsugineum Thhalv10024481m.g N
Thhalv10024526m.g Eutrema salsugineum Thhalv10024526m.g N
PK04158.1 Cannabis sativa PK04158.1 N
PK09020.1 Cannabis sativa PK09020.1 N
LjSGA_009543.1 Lotus japonicus LjSGA_009543.1 N
LjSGA_029833.1 Lotus japonicus LjSGA_029833.1 N
PDK_20s13009463g004 Phoenix dactylifera PDK_20s13009463g004 N
PDK_20s13009466g004 Phoenix dactylifera PDK_20s13009466g004 N
PDK_20s1314471g001 Phoenix dactylifera PDK_20s1314471g001 N
PDK_20s1397381g002 Phoenix dactylifera PDK_20s1397381g002 N
PDK_20s1455001g004 Phoenix dactylifera PDK_20s1455001g004 N