Sb04g000520 (Sorghum bicolor)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Sb04g000520 T249769_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.960 0.969
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.960 0.969
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.886 0.738
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb04g000520.1 MADF 574 641

Links

Other MADF family TFs
Other Sorghum bicolor TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK15172.1 Cannabis sativa PK15172.1 D 0.886
OS02G0104500 Oryza sativa OS02G0104500 D 0.960
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.939
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.914
Gorai.001G020300 Gossypium raimondii Gorai.001G020300 I 0.871
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.920
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.891
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.912
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.914
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.954
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.898
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.873
29739.m003611 Ricinus communis 29739.m003611 I 0.944
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.928
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.949
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.895
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.949
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.851
Traes_1DL_9EFDBD741 Triticum aestivum Traes_1DL_9EFDBD741 I 0.816
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.855
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.877
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I 0.830
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.855
PK14727.1 Cannabis sativa PK14727.1 I 0.890
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.944
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.877
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.938
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.864
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.908
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.897
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.876
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.971
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.971
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.954
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.887
MDP0000122269 Malus domestica MDP0000122269 I 0.907
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.954
OB02G10400 Oryza brachyantha OB02G10400 I 0.961
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.856
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.851
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.939
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.895
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.907
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.957
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.937
OBART02G00380 Oryza barthii OBART02G00380 I 0.960
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.929
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.968
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.971
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.949
Bo6g083670 Brassica oleracea Bo6g083670 I 0.891
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.890
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.960
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.944
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.907
TCM_037381 Theobroma cacao TCM_037381 I 0.906
Si033157m.g Setaria italica Si033157m.g I 0.959
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.842
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.842
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.938
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.937
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.938
AMTR_s00001p00251940 Amborella trichopoda AMTR_s00001p00251940 I 0.852
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.960
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.898
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.960
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.960
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.960
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.960
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.960