POPTR_0005s00420 (Populus trichocarpa)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 POPTR_0005s00420 T255822_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s00420.1 MADS box 10 58

Links

Other MADS box family TFs
Other Populus trichocarpa TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_43368 Carica papaya evm.TU.contig_43368 I 0.773
LjSGA_104570.1 Lotus japonicus LjSGA_104570.1 I 0.793
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.833
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.872
MDP0000925348 Malus domestica MDP0000925348 I 0.867
Gorai.013G210400 Gossypium raimondii Gorai.013G210400 I 0.711
Gorai.013G210200 Gossypium raimondii Gorai.013G210200 I 0.708
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.896
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.875
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.875
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.896
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.896
Cucsa.050930 Cucumis sativus Cucsa.050930 I 0.844
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.917
Pm004396 Prunus mume Pm004396 I 0.844
Cla009163 Citrullus lanatus Cla009163 I 0.708
Cla005226 Citrullus lanatus Cla005226 I 0.844
TCM_026842 Theobroma cacao TCM_026842 I 0.833
PRUPE_ppa018168mg Prunus persica PRUPE_ppa018168mg I 0.844
Gorai.013G210300 Gossypium raimondii Gorai.013G210300 N 0.000