POPTR_0004s02570 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0004s02570 T278256_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.699 0.720
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.699 0.720
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.696 0.710
MYB15
M07084_2.00 		Arabidopsis thaliana
NNNHNNHHNHHYCACCWAMYH
DRKTWGGTGRDDNDDNNDNNN		 Dap-seq
OMalley et al.(2016)
ATY19_col_a 		0.675 0.720
MYB15
M02699_2.00 		Arabidopsis thaliana
CCACCTACCSBBG
CVVSGGTAGGTGG		 SELEX
Mathelier et al.(2014)
MA0574.1 		0.675 0.720
MYB15
M11041_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_01 		0.675 0.720
MYB15
M11042_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_Q2 		0.675 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s02570.1 Myb 25 72
POPTR_0004s02570.1 Myb 78 123

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB15 Arabidopsis thaliana AT3G23250 D 0.675
AtMYB74 Arabidopsis thaliana AT4G05100 D 0.699
ATMYB14 Arabidopsis lyrata Al_scaffold_0004_1573 I 0.683
AtMYB74 Arabidopsis lyrata Al_scaffold_0006_3584 I 0.699
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.707
MYB14 Arabidopsis thaliana AT2G31180 I 0.683
BGIOSGA005798 Oryza indica BGIOSGA005798 I 0.664
Bo1g051220 Brassica oleracea Bo1g051220 I 0.669
Bo1g102190 Brassica oleracea Bo1g102190 I 0.675
Bo3g025100 Brassica oleracea Bo3g025100 I 0.680
Bo4g176020 Brassica oleracea Bo4g176020 I 0.683
Bo4g176030 Brassica oleracea Bo4g176030 I 0.683
Bo6g081140 Brassica oleracea Bo6g081140 I 0.664
Bo7g040780 Brassica oleracea Bo7g040780 I 0.678
Bo9g076410 Brassica oleracea Bo9g076410 I 0.674
Bra003619 Brassica rapa Bra003619 I 0.664
Bra014929 Brassica rapa Bra014929 I 0.678
Bra018267 Brassica rapa Bra018267 I 0.683
Bra021708 Brassica rapa Bra021708 I 0.683
Bra022831 Brassica rapa Bra022831 I 0.669
Bra023742 Brassica rapa Bra023742 I 0.675
Bra026281 Brassica rapa Bra026281 I 0.669
Bra029553 Brassica rapa Bra029553 I 0.674
BRADI1G24887 Brachypodium distachyon BRADI1G24887 I 0.670
BRADI3G28830 Brachypodium distachyon BRADI3G28830 I 0.662
BRADI3G52260 Brachypodium distachyon BRADI3G52260 I 0.666
BRADI5G15760 Brachypodium distachyon BRADI5G15760 I 0.670
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I 0.663
F775_18231 Aegilops tauschii F775_18231 I 0.673
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.676
MYB15 Arabidopsis lyrata fgenesh2_kg.3__2539__AT3G23250.1 I 0.675
GLYMA03G31980 Glycine max GLYMA03G31980 I 0.674
GLYMA06G45554 Glycine max GLYMA06G45554 I 0.674
GLYMA07G30860 Glycine max GLYMA07G30860 I 0.695
GLYMA08G06440 Glycine max GLYMA08G06440 I 0.692
GLYMA10G32410 Glycine max GLYMA10G32410 I 0.678
GLYMA13G32090 Glycine max GLYMA13G32090 I 0.678
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.671
GLYMA15G07230 Glycine max GLYMA15G07230 I 0.678
GLYMA15G41255 Glycine max GLYMA15G41255 I 0.676
GLYMA20G35180 Glycine max GLYMA20G35180 I 0.661
GRMZM2G031323 Zea mays GRMZM2G031323 I 0.687
GRMZM2G166337 Zea mays GRMZM2G166337 I 0.662
GSMUA_Achr4G18180_001 Musa acuminata GSMUA_Achr4G18180_001 I 0.685
GSMUA_Achr4G28850_001 Musa acuminata GSMUA_Achr4G28850_001 I 0.661
GSMUA_Achr5G03920_001 Musa acuminata GSMUA_Achr5G03920_001 I 0.667
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I 0.666
GSMUA_Achr9G12180_001 Musa acuminata GSMUA_Achr9G12180_001 I 0.718
LPERR02G23410 Leersia perrieri LPERR02G23410 I 0.673
LPERR07G15930 Leersia perrieri LPERR07G15930 I 0.662
MLOC_53640 Hordeum vulgare MLOC_53640 I 0.664
MTR_2g011660 Medicago truncatula MTR_2g011660 I 0.678
MTR_4g091490 Medicago truncatula MTR_4g091490 I 0.688
OB02G35920 Oryza brachyantha OB02G35920 I 0.670
OBART02G28790 Oryza barthii OBART02G28790 I 0.664
OBART07G18450 Oryza barthii OBART07G18450 I 0.662
OGLUM02G29380 Oryza glumaepatula OGLUM02G29380 I 0.664
OGLUM07G18250 Oryza glumaepatula OGLUM07G18250 I 0.662
OLONG_022853 Oryza longistaminata OLONG_022853 I 0.664
OMERI02G27850 Oryza meridionalis OMERI02G27850 I 0.664
OMERI07G15370 Oryza meridionalis OMERI07G15370 I 0.662
ONIVA02G31530 Oryza nivara ONIVA02G31530 I 0.664
ONIVA06G20400 Oryza nivara ONIVA06G20400 I 0.662
OPUNC02G26430 Oryza punctata OPUNC02G26430 I 0.673
OPUNC07G17410 Oryza punctata OPUNC07G17410 I 0.662
ORGLA07G0148800 Oryza glaberrima ORGLA07G0148800 I 0.662
ORUFI02G30350 Oryza rufipogon ORUFI02G30350 I 0.664
ORUFI07G19200 Oryza rufipogon ORUFI07G19200 I 0.662
OS02G0695200 Oryza sativa OS02G0695200 I 0.664
OS07G0558100 Oryza sativa OS07G0558100 I 0.665
PGSC0003DMG400011250 Solanum tuberosum PGSC0003DMG400011250 I 0.682
PGSC0003DMG400013405 Solanum tuberosum PGSC0003DMG400013405 I 0.663
PGSC0003DMG400017223 Solanum tuberosum PGSC0003DMG400017223 I 0.668
PGSC0003DMG400022399 Solanum tuberosum PGSC0003DMG400022399 I 0.699
PGSC0003DMG400026628 Solanum tuberosum PGSC0003DMG400026628 I 0.669
POPTR_0004s03310 Populus trichocarpa POPTR_0004s03310 I 0.696
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I 0.668
POPTR_0011s04120 Populus trichocarpa POPTR_0011s04120 I 0.699
POPTR_0013s14480 Populus trichocarpa POPTR_0013s14480 I 0.671
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I 0.683
POPTR_0019s03490 Populus trichocarpa POPTR_0019s03490 I 0.700
PRUPE_ppa007438mg Prunus persica PRUPE_ppa007438mg I 0.687
Sb02g036250 Sorghum bicolor Sb02g036250 I 0.690
Sb04g031110 Sorghum bicolor Sb04g031110 I 0.677
Sb06g027180 Sorghum bicolor Sb06g027180 I 0.663
Si010384m.g Setaria italica Si010384m.g I 0.667
Si017704m.g Setaria italica Si017704m.g I 0.674
Si030273m.g Setaria italica Si030273m.g I 0.687
Solyc02g079280.2 Solanum lycopersicum Solyc02g079280.2 I 0.699
Solyc09g090130.2 Solanum lycopersicum Solyc09g090130.2 I 0.668
Solyc10g005460.2 Solanum lycopersicum Solyc10g005460.2 I 0.682
Solyc10g005550.1 Solanum lycopersicum Solyc10g005550.1 I 0.664
Solyc10g008700.1 Solanum lycopersicum Solyc10g008700.1 I 0.669
TCM_004046 Theobroma cacao TCM_004046 I 0.663
TCM_007865 Theobroma cacao TCM_007865 I 0.679
TCM_007904 Theobroma cacao TCM_007904 I 0.687
TCM_030009 Theobroma cacao TCM_030009 I 0.699
TCM_030020 Theobroma cacao TCM_030020 I 0.718
Traes_2AL_CC403D182 Triticum aestivum Traes_2AL_CC403D182 I 0.673
Traes_2BL_34A0848F2 Triticum aestivum Traes_2BL_34A0848F2 I 0.673
Traes_2BL_FD8C2F815 Triticum aestivum Traes_2BL_FD8C2F815 I 0.673
Traes_2DL_54E6F0446 Triticum aestivum Traes_2DL_54E6F0446 I 0.673
Traes_2DL_D39684C41 Triticum aestivum Traes_2DL_D39684C41 I 0.673
TRIUR3_18702 Triticum urartu TRIUR3_18702 I 0.673
VIT_00s0203g00070 Vitis vinifera VIT_00s0203g00070 I 0.699
VIT_07s0005g03340 Vitis vinifera VIT_07s0005g03340 I 0.678
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I 0.681
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I 0.677
AtMYB41 Vitis vinifera VIT_12s0134g00570 I 0.687
Ca_00232 Cicer arietinum Ca_00232 I 0.678
Ca_12130 Cicer arietinum Ca_12130 I 0.672
Ca_22021 Cicer arietinum Ca_22021 I 0.688
Cla001360 Citrullus lanatus Cla001360 I 0.699
Cla006077 Citrullus lanatus Cla006077 I 0.663
Cla007838 Citrullus lanatus Cla007838 I 0.666
Cla019747 Citrullus lanatus Cla019747 I 0.665
Pm009892 Prunus mume Pm009892 I 0.696
cassava19500.valid.m1 Manihot esculenta cassava19500.valid.m1 I 0.674
cassava2558.valid.m1 Manihot esculenta cassava2558.valid.m1 I 0.690
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.678
cassava29820.valid.m1 Manihot esculenta cassava29820.valid.m1 I 0.668
cassava39892.m1 Manihot esculenta cassava39892.m1 I 0.690
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.670
cassava47180.m1 Manihot esculenta cassava47180.m1 I 0.671
Cucsa.045790 Cucumis sativus Cucsa.045790 I 0.699
Cucsa.053600 Cucumis sativus Cucsa.053600 I 0.672
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.665
Cucsa.148040 Cucumis sativus Cucsa.148040 I 0.666
mgf018114m Mimulus guttatus mgf018114m I 0.696
Aquca_011_00538 Aquilegia coerulea Aquca_011_00538 I 0.670
Aquca_034_00364 Aquilegia coerulea Aquca_034_00364 I 0.671
Bostr.19424s0318 Boechera stricta Bostr.19424s0318 I 0.678
Bostr.24513s0107 Boechera stricta Bostr.24513s0107 I 0.683
Bostr.25219s0339 Boechera stricta Bostr.25219s0339 I 0.681
Bostr.2983s0050 Boechera stricta Bostr.2983s0050 I 0.692
Cagra.1671s0249 Capsella grandiflora Cagra.1671s0249 I 0.682
Cagra.1981s0006 Capsella grandiflora Cagra.1981s0006 I 0.687
Cagra.2181s0015 Capsella grandiflora Cagra.2181s0015 I 0.678
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I 0.689
Carubv10001366m.g Capsella rubella Carubv10001366m.g I 0.687
Carubv10015750m.g Capsella rubella Carubv10015750m.g I 0.678
Carubv10023905m.g Capsella rubella Carubv10023905m.g I 0.689
Ciclev10015729m.g Citrus clementina Ciclev10015729m.g I 0.699
Ciclev10017668m.g Citrus clementina Ciclev10017668m.g I 0.690
Ciclev10017679m.g Citrus clementina Ciclev10017679m.g I 0.737
Ciclev10021699m.g Citrus clementina Ciclev10021699m.g I 0.663
Eucgr.A01772 Eucalyptus grandis Eucgr.A01772 I 0.690
Eucgr.D00040 Eucalyptus grandis Eucgr.D00040 I 0.735
Eucgr.D00042 Eucalyptus grandis Eucgr.D00042 I 0.735
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.694
Eucgr.E03689 Eucalyptus grandis Eucgr.E03689 I 0.696
Eucgr.E03819 Eucalyptus grandis Eucgr.E03819 I 0.696
Eucgr.H00158 Eucalyptus grandis Eucgr.H00158 I 0.683
Eucgr.H03057 Eucalyptus grandis Eucgr.H03057 I 0.701
evm.TU.supercontig_27.135 Carica papaya evm.TU.supercontig_27.135 I 0.667
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.708
evm.TU.supercontig_50.19 Carica papaya evm.TU.supercontig_50.19 I 0.663
gene30725-v1.0-hybrid Fragaria vesca gene30725-v1.0-hybrid I 0.696
Gorai.001G177100 Gossypium raimondii Gorai.001G177100 I 0.663
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I 0.662
Gorai.005G206300 Gossypium raimondii Gorai.005G206300 I 0.683
Gorai.007G146200 Gossypium raimondii Gorai.007G146200 I 0.663
Gorai.008G151400 Gossypium raimondii Gorai.008G151400 I 0.687
Gorai.009G174500 Gossypium raimondii Gorai.009G174500 I 0.699
Gorai.010G149300 Gossypium raimondii Gorai.010G149300 I 0.690
Gorai.011G023800 Gossypium raimondii Gorai.011G023800 I 0.674
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I 0.664
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I 0.668
Gorai.013G143200 Gossypium raimondii Gorai.013G143200 I 0.709
Lus10006740.g Linum usitatissimum Lus10006740.g I 0.666
Lus10020085.g Linum usitatissimum Lus10020085.g I 0.666
Lus10021185.g Linum usitatissimum Lus10021185.g I 0.671
Lus10033438.g Linum usitatissimum Lus10033438.g I 0.673
MDP0000131822 Malus domestica MDP0000131822 I 0.717
MDP0000145050 Malus domestica MDP0000145050 I 0.681
MDP0000155426 Malus domestica MDP0000155426 I 0.682
MDP0000289283 Malus domestica MDP0000289283 I 0.738
MDP0000492221 Malus domestica MDP0000492221 I 0.696
orange1.1g018154m.g Citrus sinensis orange1.1g018154m.g I 0.699
orange1.1g024860m.g Citrus sinensis orange1.1g024860m.g I 0.673
orange1.1g035629m.g Citrus sinensis orange1.1g035629m.g I 0.690
Pavir.Aa01159 Panicum virgatum Pavir.Aa01159 I 0.674
Pavir.Ba00668 Panicum virgatum Pavir.Ba00668 I 0.687
Pavir.J10932 Panicum virgatum Pavir.J10932 I 0.674
Pavir.J38204 Panicum virgatum Pavir.J38204 I 0.690
SapurV1A.0028s0230 Salix purpurea SapurV1A.0028s0230 I 0.695
SapurV1A.0048s0210 Salix purpurea SapurV1A.0048s0210 I 0.694
SapurV1A.0483s0100 Salix purpurea SapurV1A.0483s0100 I 0.707
SapurV1A.1088s0050 Salix purpurea SapurV1A.1088s0050 I 0.674
SapurV1A.1746s0010 Salix purpurea SapurV1A.1746s0010 I 0.677
SapurV1A.3561s0010 Salix purpurea SapurV1A.3561s0010 I 0.674
Thhalv10017136m.g Eutrema salsugineum Thhalv10017136m.g I 0.683
Thhalv10022110m.g Eutrema salsugineum Thhalv10022110m.g I 0.678
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.669
Thhalv10029512m.g Eutrema salsugineum Thhalv10029512m.g I 0.696
PK20358.1 Cannabis sativa PK20358.1 I 0.672
PDK_20s1427521g001 Phoenix dactylifera PDK_20s1427521g001 I 0.664
PGSC0003DMG400008337 Solanum tuberosum PGSC0003DMG400008337 N 0.663
PGSC0003DMG400042926 Solanum tuberosum PGSC0003DMG400042926 N 0.681
POPTR_0011s04000 Populus trichocarpa POPTR_0011s04000 N 0.703
POPTR_0011s04010 Populus trichocarpa POPTR_0011s04010 N 0.723
POPTR_0011s04020 Populus trichocarpa POPTR_0011s04020 N 0.736
PRUPE_ppa015081mg Prunus persica PRUPE_ppa015081mg N 0.680
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N 0.678
Solyc03g093930.2 Solanum lycopersicum Solyc03g093930.2 N 0.681
TCM_033015 Theobroma cacao TCM_033015 N 0.686
TCM_033016 Theobroma cacao TCM_033016 N 0.686
VIT_00s0203g00170 Vitis vinifera VIT_00s0203g00170 N 0.696
Pm009880 Prunus mume Pm009880 N 0.690
Pm015302 Prunus mume Pm015302 N 0.678
29933.m001454 Ricinus communis 29933.m001454 N 0.709
cassava5261.m1 Manihot esculenta cassava5261.m1 N 0.712
cassava5263.m1 Manihot esculenta cassava5263.m1 N 0.711
Eucgr.D00037 Eucalyptus grandis Eucgr.D00037 N 0.706
Eucgr.D00044 Eucalyptus grandis Eucgr.D00044 N 0.682
Eucgr.D00050 Eucalyptus grandis Eucgr.D00050 N 0.668
Eucgr.L02563 Eucalyptus grandis Eucgr.L02563 N 0.664
evm.TU.supercontig_27.156 Carica papaya evm.TU.supercontig_27.156 N 0.721
gene30736-v1.0-hybrid Fragaria vesca gene30736-v1.0-hybrid N 0.703
Gorai.010G148300 Gossypium raimondii Gorai.010G148300 N 0.717
Gorai.011G021300 Gossypium raimondii Gorai.011G021300 N 0.719
Gorai.013G143000 Gossypium raimondii Gorai.013G143000 N 0.720
Gorai.013G143100 Gossypium raimondii Gorai.013G143100 N 0.681
MDP0000407613 Malus domestica MDP0000407613 N 0.682
orange1.1g037956m.g Citrus sinensis orange1.1g037956m.g N 0.730
SapurV1A.0028s0640 Salix purpurea SapurV1A.0028s0640 N 0.775
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N 0.683
PK24260.1 Cannabis sativa PK24260.1 N 0.661