Solyc12g099130.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc12g099130.1 T280319_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.808 0.882
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.775 0.796
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.775 0.796
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.725 0.753
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.725 0.753
MYB57
M01072_2.00 		Arabidopsis thaliana
RCCTAAYT
ARTTAGGY		 PBM
Sullivan et al.(2014)
pTH9748 		0.697 0.774
MYB57
M07059_2.00 		Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR		 Dap-seq
OMalley et al.(2016)
MYB57_col_a 		0.697 0.774
MYB57
M07060_2.00 		Arabidopsis thaliana
ACCTAAY
RTTAGGT		 Dap-seq
OMalley et al.(2016)
MYB57_colamp_a 		0.697 0.774
MYB05_ANTMA
M11067_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB305_Q3 		0.693 0.806
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.682 0.656
MYB24
M02311_2.00 		Arabidopsis thaliana
RCCDAMYNN
NNRKTHGGY		 PBM
Weirauch et al.(2014)
pTH8662 		0.668 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g099130.1.1 Myb 20 67
Solyc12g099130.1.1 Myb 73 118

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

495 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPL10 Arabidopsis thaliana AT1G27370 D
Bo5g051980 Brassica oleracea Bo5g051980 I
Bo7g049950 Brassica oleracea Bo7g049950 I
Bra010949 Brassica rapa Bra010949 I
Bra030040 Brassica rapa Bra030040 I
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I
Ca_11356 Cicer arietinum Ca_11356 I
29929.m004641 Ricinus communis 29929.m004641 I
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I
Lus10006411.g Linum usitatissimum Lus10006411.g I
Lus10011356.g Linum usitatissimum Lus10011356.g I
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I
SPL2 Arabidopsis thaliana AT5G43270 N
SPL3 Oryza indica BGIOSGA007499 N
BGIOSGA007643 Oryza indica BGIOSGA007643 N
SPL12 Oryza indica BGIOSGA020577 N
BGIOSGA020731 Oryza indica BGIOSGA020731 N
Bo7g065290 Brassica oleracea Bo7g065290 N
Bo9g058970 Brassica oleracea Bo9g058970 N
Bra027478 Brassica rapa Bra027478 N
Bra033671 Brassica rapa Bra033671 N
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N
F775_31908 Aegilops tauschii F775_31908 N
GLYMA11G36980 Glycine max GLYMA11G36980 N
GRMZM2G065451 Zea mays GRMZM2G065451 N
GRMZM2G097275 Zea mays GRMZM2G097275 N
GRMZM2G126827 Zea mays GRMZM2G126827 N
GRMZM2G156621 Zea mays GRMZM2G156621 N
GRMZM2G163813 Zea mays GRMZM2G163813 N
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N
LPERR02G02980 Leersia perrieri LPERR02G02980 N
LPERR02G04880 Leersia perrieri LPERR02G04880 N
LPERR06G22200 Leersia perrieri LPERR06G22200 N
MLOC_11199 Hordeum vulgare MLOC_11199 N
MLOC_62426 Hordeum vulgare MLOC_62426 N
MTR_3g085180 Medicago truncatula MTR_3g085180 N
OB02G12930 Oryza brachyantha OB02G12930 N
OB02G14840 Oryza brachyantha OB02G14840 N
OB06G31550 Oryza brachyantha OB06G31550 N
OBART02G03260 Oryza barthii OBART02G03260 N
OBART06G23820 Oryza barthii OBART06G23820 N
OBART06G26610 Oryza barthii OBART06G26610 N
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N
OGLUM06G25070 Oryza glumaepatula OGLUM06G25070 N
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N
OLONG_012160 Oryza longistaminata OLONG_012160 N
OLONG_025693 Oryza longistaminata OLONG_025693 N
OMERI02G03900 Oryza meridionalis OMERI02G03900 N
OMERI02G06420 Oryza meridionalis OMERI02G06420 N
OMERI06G23750 Oryza meridionalis OMERI06G23750 N
OMERI06G26720 Oryza meridionalis OMERI06G26720 N
ONIVA02G03070 Oryza nivara ONIVA02G03070 N
ONIVA06G27990 Oryza nivara ONIVA06G27990 N
ONIVA06G29160 Oryza nivara ONIVA06G29160 N
OPUNC02G02570 Oryza punctata OPUNC02G02570 N
OPUNC02G04800 Oryza punctata OPUNC02G04800 N
OPUNC06G24320 Oryza punctata OPUNC06G24320 N
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N
ORGLA06G0199900 Oryza glaberrima ORGLA06G0199900 N
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N
ORUFI06G25590 Oryza rufipogon ORUFI06G25590 N
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N
OS02G0139400 Oryza sativa OS02G0139400 N
SPL4 Oryza sativa OS02G0174100 N
SPL11 Oryza sativa OS06G0663500 N
SPL12 Oryza sativa OS06G0703500 N
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N
Sb04g003175 Sorghum bicolor Sb04g003175 N
Sb04g004940 Sorghum bicolor Sb04g004940 N
SPL2 Arabidopsis lyrata scaffold_800740.1 N
Si017749m.g Setaria italica Si017749m.g N
Solyc04g045560.2 Solanum lycopersicum Solyc04g045560.2 N
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N
TCM_008772 Theobroma cacao TCM_008772 N
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N
TRIUR3_09477 Triticum urartu TRIUR3_09477 N
SPL2 Vitis vinifera VIT_11s0065g00170 N
Pm007020 Prunus mume Pm007020 N
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N
mgf010397m Mimulus guttatus mgf010397m N
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N
Carubv10026434m.g Capsella rubella Carubv10026434m.g N
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N
Lus10021614.g Linum usitatissimum Lus10021614.g N
MDP0000155354 Malus domestica MDP0000155354 N
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N
Pavir.J20730 Panicum virgatum Pavir.J20730 N
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N
PK16953.1 Cannabis sativa PK16953.1 N
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N