Cagra.0487s0012 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0487s0012 T285965_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.860 0.971
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.685 0.786
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.682 0.800
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.675 0.743
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.675 0.743
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0487s0012.1.p Myb 75 121
Cagra.0487s0012.1.p Myb 127 173
Cagra.0487s0012.1.p Myb 179 224

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.078000 Cucumis sativus Cucsa.078000 N
Ciclev10021891m.g Citrus clementina Ciclev10021891m.g N
Carubv10005663m.g Capsella rubella Carubv10005663m.g N
Cagra.2997s0002 Capsella grandiflora Cagra.2997s0002 N
Bostr.2021s0045 Boechera stricta Bostr.2021s0045 N
mgf007349m Mimulus guttatus mgf007349m N
mgf003491m Mimulus guttatus mgf003491m N
estExt_fgenesh1_pg.C_930051 Physcomitrella patens estExt_fgenesh1_pg.C_930051 N
e_gw1.317.27.1 Physcomitrella patens e_gw1.317.27.1 N
Cucsa.150110 Cucumis sativus Cucsa.150110 N
evm.TU.supercontig_21.106 Carica papaya evm.TU.supercontig_21.106 N
cassava6828.valid.m1 Manihot esculenta cassava6828.valid.m1 N
cassava38073.valid.m1 Manihot esculenta cassava38073.valid.m1 N
30217.m000254 Ricinus communis 30217.m000254 N
Pm020315 Prunus mume Pm020315 N
Cla015151 Citrullus lanatus Cla015151 N
Cla002744 Citrullus lanatus Cla002744 N
Ca_17230 Cicer arietinum Ca_17230 N
Ca_11707 Cicer arietinum Ca_11707 N
MDP0000675982 Malus domestica MDP0000675982 N
PDK_20s1512801g001 Phoenix dactylifera PDK_20s1512801g001 N
chr3.CM0423.200.nd Lotus japonicus chr3.CM0423.200.nd N
chr1.LjT46N10.100.nd Lotus japonicus chr1.LjT46N10.100.nd N
PK01824.1 Cannabis sativa PK01824.1 N
Thhalv10026242m.g Eutrema salsugineum Thhalv10026242m.g N
Pavir.J28064 Panicum virgatum Pavir.J28064 N
Pavir.Aa01947 Panicum virgatum Pavir.Aa01947 N
orange1.1g025914m.g Citrus sinensis orange1.1g025914m.g N
VIT_00s0184g00010 Vitis vinifera VIT_00s0184g00010 N
MDP0000300382 Malus domestica MDP0000300382 N
MDP0000129941 Malus domestica MDP0000129941 N
Lus10022769.g Linum usitatissimum Lus10022769.g N
Lus10011836.g Linum usitatissimum Lus10011836.g N
Gorai.007G156300 Gossypium raimondii Gorai.007G156300 N
Gorai.001G231300 Gossypium raimondii Gorai.001G231300 N
Gorai.001G188300 Gossypium raimondii Gorai.001G188300 N
Gorai.001G105100 Gossypium raimondii Gorai.001G105100 N
GLYMA18G33460 Glycine max GLYMA18G33460 N
OGLUM02G17700 Oryza glumaepatula OGLUM02G17700 N
OBART02G17450 Oryza barthii OBART02G17450 N
OB02G25330 Oryza brachyantha OB02G25330 N
MTR_8g012655 Medicago truncatula MTR_8g012655 N
MTR_7g055857 Medicago truncatula MTR_7g055857 N
LPERR02G13930 Leersia perrieri LPERR02G13930 N
GSMUA_Achr9G01590_001 Musa acuminata GSMUA_Achr9G01590_001 N
GSMUA_Achr8G00300_001 Musa acuminata GSMUA_Achr8G00300_001 N
GSMUA_Achr6G06510_001 Musa acuminata GSMUA_Achr6G06510_001 N
OLONG_009588 Oryza longistaminata OLONG_009588 N
GLYMA08G46250 Glycine max GLYMA08G46250 N
F775_30629 Aegilops tauschii F775_30629 N
BRADI3G43822 Brachypodium distachyon BRADI3G43822 N
Bra034895 Brassica rapa Bra034895 N
Bo8g033910 Brassica oleracea Bo8g033910 N
Bo11579s010 Brassica oleracea Bo11579s010 N
BGIOSGA008254 Oryza indica BGIOSGA008254 N
AT4G13040 Arabidopsis thaliana AT4G13040 N
Sb04g020150 Sorghum bicolor Sb04g020150 N
TRIUR3_27883 Triticum urartu TRIUR3_27883 N
Traes_6DS_43372C0A6 Triticum aestivum Traes_6DS_43372C0A6 N
Traes_6AL_13895C140 Triticum aestivum Traes_6AL_13895C140 N
TCM_002835 Theobroma cacao TCM_002835 N
Solyc09g059510.2 Solanum lycopersicum Solyc09g059510.2 N
Si018306m.g Setaria italica Si018306m.g N
SELMODRAFT_443366 Selaginella moellendorffii SELMODRAFT_443366 N
SELMODRAFT_420254 Selaginella moellendorffii SELMODRAFT_420254 N
AMTR_s00013p00252260 Amborella trichopoda AMTR_s00013p00252260 N
PRUPE_ppa011812mg Prunus persica PRUPE_ppa011812mg N
POPTR_0002s24750 Populus trichocarpa POPTR_0002s24750 N
PGSC0003DMG400017485 Solanum tuberosum PGSC0003DMG400017485 N
OS02G0499000 Oryza sativa OS02G0499000 N
ORUFI02G18290 Oryza rufipogon ORUFI02G18290 N
ORGLA02G0152600 Oryza glaberrima ORGLA02G0152600 N
OPUNC02G15530 Oryza punctata OPUNC02G15530 N
ONIVA02G18870 Oryza nivara ONIVA02G18870 N