Ciclev10026089m.g (Citrus clementina)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Ciclev10026089m.g T286642_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.845 0.915
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.845 0.915
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.845 0.915
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.845 0.915
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.800 0.915
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.721 0.809
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.675 0.766
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.673 0.745
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.673 0.745
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10026089m Myb 5 57

Links

Other Myb/SANT family TFs
Other Citrus clementina TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G63040 Arabidopsis thaliana AT1G63040 D
Cla011673 Citrullus lanatus Cla011673 I
ORUFI02G29210 Oryza rufipogon ORUFI02G29210 I
OS02G0676800 Oryza sativa OS02G0676800 I
PGSC0003DMG400022759 Solanum tuberosum PGSC0003DMG400022759 I
Sb04g031960 Sorghum bicolor Sb04g031960 I
scaffold_101390.1 Arabidopsis lyrata scaffold_101390.1 I
Solyc08g080290.2 Solanum lycopersicum Solyc08g080290.2 I
TCM_016176 Theobroma cacao TCM_016176 I
OPUNC02G25450 Oryza punctata OPUNC02G25450 I
Cucsa.302760 Cucumis sativus Cucsa.302760 I
Cagra.0568s0175 Capsella grandiflora Cagra.0568s0175 I
Cagra.6357s0007 Capsella grandiflora Cagra.6357s0007 I
Carubv10012147m.g Capsella rubella Carubv10012147m.g I
Carubv10022214m.g Capsella rubella Carubv10022214m.g I
Gorai.003G162600 Gossypium raimondii Gorai.003G162600 I
Pavir.Ab02683 Panicum virgatum Pavir.Ab02683 I
Thhalv10009659m.g Eutrema salsugineum Thhalv10009659m.g I
ONIVA02G30630 Oryza nivara ONIVA02G30630 I
BGIOSGA008802 Oryza indica BGIOSGA008802 I
Bo9g028820 Brassica oleracea Bo9g028820 I
fgenesh1_pm.C_scaffold_1001063 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001063 I
GRMZM2G000520 Zea mays GRMZM2G000520 I
GRMZM2G434203 Zea mays GRMZM2G434203 I
LPERR02G22600 Leersia perrieri LPERR02G22600 I
OBART02G27750 Oryza barthii OBART02G27750 I
OGLUM02G28310 Oryza glumaepatula OGLUM02G28310 I
OMERI02G26970 Oryza meridionalis OMERI02G26970 I
OBART04G22210 Oryza barthii OBART04G22210 N
MLOC_62554 Hordeum vulgare MLOC_62554 N
Traes_6DL_FD6D63D1A Triticum aestivum Traes_6DL_FD6D63D1A N
LPERR04G18180 Leersia perrieri LPERR04G18180 N
OGLUM04G22250 Oryza glumaepatula OGLUM04G22250 N
OS04G0572200 Oryza sativa OS04G0572200 N
ORUFI04G23880 Oryza rufipogon ORUFI04G23880 N
BRADI3G51610 Brachypodium distachyon BRADI3G51610 N
OMERI04G18760 Oryza meridionalis OMERI04G18760 N
BGIOSGA016949 Oryza indica BGIOSGA016949 N
ONIVA04G20830 Oryza nivara ONIVA04G20830 N