evm.TU.supercontig_1066.1 (Carica papaya)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 evm.TU.supercontig_1066.1 T287027_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KAN1
M00878_2.00 		Arabidopsis thaliana
NNRTNBNN
NNVNAYNN		 PBM
Franco-Zorrilla et al.(2014)
KAN1 		0.909 0.979
KAN1
M02308_2.00 		Arabidopsis thaliana
NDNDTAHNHN
NDNDTAHNHN		 PBM
Weirauch et al.(2014)
pTH7135 		0.909 0.979
KAN2
M07018_2.00 		Arabidopsis thaliana
HHHNDWATATTCTYH
DRAGAATATWHNDDD		 Dap-seq
OMalley et al.(2016)
KAN2_col_a 		0.875 0.979
KAN2
M07019_2.00 		Arabidopsis thaliana
NWWTATTCYYH
DRRGAATAWWN		 Dap-seq
OMalley et al.(2016)
KAN2_colamp_a 		0.875 0.979
KAN4
M00881_2.00 		Arabidopsis thaliana
NWNRTBCNN
NNGVAYNWN		 PBM
Franco-Zorrilla et al.(2014)
KAN4 		0.821 0.936
AT1G14600
M01268_2.00 		Arabidopsis thaliana
NWAYATTCYN
NRGAATRTWN		 PBM
Lambert et al.(2019)
pTH11557 		0.667 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_1066.1 Myb 291 342

Links

Other Myb/SANT family TFs
Other Carica papaya TFs

396 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH104 Arabidopsis thaliana AT4G14410 D
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I
orange1.1g028060m.g Citrus sinensis orange1.1g028060m.g I
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I
Ciclev10005872m.g Citrus clementina Ciclev10005872m.g I
Carubv10005335m.g Capsella rubella Carubv10005335m.g I
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I
Ca_23174 Cicer arietinum Ca_23174 I
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I
MTR_1g043430 Medicago truncatula MTR_1g043430 I
GLYMA20G22010 Glycine max GLYMA20G22010 I
GLYMA10G01010 Glycine max GLYMA10G01010 I
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I
Bra041033 Brassica rapa Bra041033 I
29603.m000513 Ricinus communis 29603.m000513 N
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N
POPTR_0008s16560 Populus trichocarpa POPTR_0008s16560 N
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N
Lus10021199.g Linum usitatissimum Lus10021199.g N
Lus10021876.g Linum usitatissimum Lus10021876.g N
Lus10041148.g Linum usitatissimum Lus10041148.g N
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N