Carubv10022351m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10022351m.g T297540_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC007
M07164_2.00 		Arabidopsis thaliana
TTRCKTVHDNNNYAMG
CKTRNNNHDBAMGYAA		 Dap-seq
OMalley et al.(2016)
VND4_colamp_a 		0.966 0.974
NAC007
M07165_2.00 		Arabidopsis thaliana
TGCKTVHDNHDYAMG
CKTRHDNHDBAMGCA		 Dap-seq
OMalley et al.(2016)
VND4_col 		0.966 0.974
NAC037
M07187_2.00 		Arabidopsis thaliana
CKTVNDNHNYAMG
CKTRNDNHNBAMG		 Dap-seq
OMalley et al.(2016)
VND1_col_a 		0.918 0.842
ANAC076
M07224_2.00 		Arabidopsis thaliana
TRCKTVHNNHNYAMG
CKTRNDNNDBAMGYA		 Dap-seq
OMalley et al.(2016)
VND2_col_a 		0.913 0.842
ANAC076
M07225_2.00 		Arabidopsis thaliana
TTGCKTVHNNHNYAMGYHAHNNN
NNNDTDRCKTRNDNNDBAMGCAA		 Dap-seq
OMalley et al.(2016)
VND2_colamp_a 		0.913 0.842
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10022351m NAC/NAM 8 135

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

275 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB1E Arabidopsis thaliana AT1G63030 D 0.000
DREB1F Arabidopsis thaliana AT1G12610 D 0.000
DDF1 Arabidopsis lyrata fgenesh2_kg.1__1363__AT1G12610.1 D 0.000
ddf2 Arabidopsis lyrata fgenesh2_kg.2__175__AT1G63030.1 D 0.000
Cucsa.302750 Cucumis sativus Cucsa.302750 I 0.000
Thhalv10023865m.g Eutrema salsugineum Thhalv10023865m.g I 0.000
mgf017136m Mimulus guttatus mgf017136m I 0.000
mgf019061m Mimulus guttatus mgf019061m I 0.000
Aquca_013_00436 Aquilegia coerulea Aquca_013_00436 I 0.000
Bostr.13671s0200 Boechera stricta Bostr.13671s0200 I 0.000
Bostr.22157s0019 Boechera stricta Bostr.22157s0019 I 0.000
Cagra.0568s0171 Capsella grandiflora Cagra.0568s0171 I 0.000
Cagra.23885s0001 Capsella grandiflora Cagra.23885s0001 I 0.000
Carubv10010303m.g Capsella rubella Carubv10010303m.g I 0.000
Carubv10021910m.g Capsella rubella Carubv10021910m.g I 0.000
Lus10001871.g Linum usitatissimum Lus10001871.g I 0.000
Lus10006332.g Linum usitatissimum Lus10006332.g I 0.000
Lus10006334.g Linum usitatissimum Lus10006334.g I 0.000
Lus10029601.g Linum usitatissimum Lus10029601.g I 0.000
Lus10029602.g Linum usitatissimum Lus10029602.g I 0.000
SapurV1A.0045s0710 Salix purpurea SapurV1A.0045s0710 I 0.000
SapurV1A.0282s0070 Salix purpurea SapurV1A.0282s0070 I 0.000
SapurV1A.0282s0080 Salix purpurea SapurV1A.0282s0080 I 0.000
Thhalv10009978m.g Eutrema salsugineum Thhalv10009978m.g I 0.000
GSMUA_Achr11G21630_001 Musa acuminata GSMUA_Achr11G21630_001 I 0.000
Bo01335s010 Brassica oleracea Bo01335s010 I 0.000
Bo5g016750 Brassica oleracea Bo5g016750 I 0.000
Bo8g108050 Brassica oleracea Bo8g108050 I 0.000
Bra016763 Brassica rapa Bra016763 I 0.000
Bra019777 Brassica rapa Bra019777 I 0.000
Bra026963 Brassica rapa Bra026963 I 0.000
GLYMA11G19341 Glycine max GLYMA11G19341 I 0.000
GLYMA12G30740 Glycine max GLYMA12G30740 I 0.000
GLYMA13G39540 Glycine max GLYMA13G39540 I 0.000
cassava41192.m1 Manihot esculenta cassava41192.m1 I 0.000
MTR_2g085015 Medicago truncatula MTR_2g085015 I 0.000
PGSC0003DMG400004255 Solanum tuberosum PGSC0003DMG400004255 I 0.000
PGSC0003DMG400012525 Solanum tuberosum PGSC0003DMG400012525 I 0.000
POPTR_0001s08710 Populus trichocarpa POPTR_0001s08710 I 0.000
POPTR_0001s08720 Populus trichocarpa POPTR_0001s08720 I 0.000
VIT_02s0025g04460 Vitis vinifera VIT_02s0025g04460 I 0.000
30190.m011119 Ricinus communis 30190.m011119 I 0.000
30190.m011120 Ricinus communis 30190.m011120 I 0.000
60638.m00016 Ricinus communis 60638.m00016 I 0.000