XP_002939386 (Xenopus tropicalis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 XP_002939386 T319710_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.992 0.992
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.992 0.992
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.992 0.992
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.992 0.992
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.992 0.992
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.992 0.992
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.992 0.992
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.992 0.992
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.992 0.992
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.992 0.992
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.992 0.992
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.992 0.992
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.923 0.923
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.923 0.923
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.923 0.923
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.923 0.923
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.923 0.923
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.923 0.923
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.923 0.923
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.923 0.923
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.923 0.923
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.923 0.923
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.923 0.923
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.923 0.923
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.915 0.915
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.915 0.915
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.915 0.915
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.915 0.915
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.915 0.915
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.915 0.915
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.915 0.915
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.915 0.915
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.915 0.915
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.915 0.915
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.915 0.915
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.915 0.915
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.731 0.731
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.731 0.731
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.731 0.731
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.731 0.731
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002939386 Runt 65 194

Links

Other Runt family TFs
Other Xenopus tropicalis TFs

372 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006322 Ricinus communis 30169.m006322 I
POPTR_0007s08190 Populus trichocarpa POPTR_0007s08190 I
POPTR_0013s14560 Populus trichocarpa POPTR_0013s14560 I
Sb06g027180 Sorghum bicolor Sb06g027180 I
Si010384m.g Setaria italica Si010384m.g I
Solyc07g054980.1 Solanum lycopersicum Solyc07g054980.1 I
TCM_007865 Theobroma cacao TCM_007865 I
VIT_12s0134g00480 Vitis vinifera VIT_12s0134g00480 I
VIT_12s0134g00490 Vitis vinifera VIT_12s0134g00490 I
VIT_19s0085g00050 Vitis vinifera VIT_19s0085g00050 I
BGIOSGA014440 Oryza indica BGIOSGA014440 I
Gorai.002G016800 Gossypium raimondii Gorai.002G016800 I
Gorai.002G106300 Gossypium raimondii Gorai.002G106300 I
Gorai.012G132400 Gossypium raimondii Gorai.012G132400 I
Lus10022021.g Linum usitatissimum Lus10022021.g I
Lus10039734.g Linum usitatissimum Lus10039734.g I
Lus10039735.g Linum usitatissimum Lus10039735.g I
MDP0000155426 Malus domestica MDP0000155426 I
SapurV1A.0284s0110 Salix purpurea SapurV1A.0284s0110 I
OS04G0594100 Oryza sativa OS04G0594100 I
AMTR_s00036p00107460 Amborella trichopoda AMTR_s00036p00107460 I
BRADI5G20130 Brachypodium distachyon BRADI5G20130 I
AtMYB10 Arabidopsis lyrata fgenesh2_kg.3__1346__AT3G12820.1 I
GLYMA06G45554 Glycine max GLYMA06G45554 I
GLYMA12G11330 Glycine max GLYMA12G11330 I
GRMZM2G038722 Zea mays GRMZM2G038722 I
GSMUA_Achr5G14600_001 Musa acuminata GSMUA_Achr5G14600_001 I
OB04G30570 Oryza brachyantha OB04G30570 I
OBART04G23680 Oryza barthii OBART04G23680 I
OMERI04G19570 Oryza meridionalis OMERI04G19570 I
OGLUM04G23630 Oryza glumaepatula OGLUM04G23630 I
POPTR_0005s09930 Populus trichocarpa POPTR_0005s09930 I
ORUFI04G25410 Oryza rufipogon ORUFI04G25410 I
ONIVA04G19740 Oryza nivara ONIVA04G19740 I
OPUNC04G21230 Oryza punctata OPUNC04G21230 I
ORGLA04G0202400 Oryza glaberrima ORGLA04G0202400 I
PK24260.1 Cannabis sativa PK24260.1 N
SapurV1A.0048s0160 Salix purpurea SapurV1A.0048s0160 N
MDP0000407613 Malus domestica MDP0000407613 N
Lus10039772.g Linum usitatissimum Lus10039772.g N
POPTR_0019s14140 Populus trichocarpa POPTR_0019s14140 N
PRUPE_ppa026553mg Prunus persica PRUPE_ppa026553mg N
Lus10033738.g Linum usitatissimum Lus10033738.g N
Lus10031607.g Linum usitatissimum Lus10031607.g N
Lus10018547.g Linum usitatissimum Lus10018547.g N
Lus10018546.g Linum usitatissimum Lus10018546.g N
GLYMA12G32541 Glycine max GLYMA12G32541 N
Gorai.005G206800 Gossypium raimondii Gorai.005G206800 N
gene01998-v1.0-hybrid Fragaria vesca gene01998-v1.0-hybrid N
evm.TU.supercontig_34.62 Carica papaya evm.TU.supercontig_34.62 N
MTR_2g089450 Medicago truncatula MTR_2g089450 N
Pm015302 Prunus mume Pm015302 N
Pm009880 Prunus mume Pm009880 N