Pavir.Da01160 (Panicum virgatum)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Pavir.Da01160 T321220_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.755 0.755
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.755 0.755
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da01160.1.p RWP-RK 813 861

Links

Other RWP-RK family TFs
Other Panicum virgatum TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RKD2 Arabidopsis thaliana AT1G74480 D 0.755
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.811
RKD1 Arabidopsis thaliana AT1G18790 I 0.776
BGIOSGA005630 Oryza indica BGIOSGA005630 I 0.837
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.959
Bra008153 Brassica rapa Bra008153 I 0.735
Bra015907 Brassica rapa Bra015907 I 0.735
F775_00225 Aegilops tauschii F775_00225 I 0.735
F775_07483 Aegilops tauschii F775_07483 I 0.878
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 0.735
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.796
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 0.735
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.776
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.796
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.755
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.776
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.735
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.939
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.939
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.838
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.918
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.776
OB02G39310 Oryza brachyantha OB02G39310 I 0.898
OB06G17750 Oryza brachyantha OB06G17750 I 0.939
OBART02G32320 Oryza barthii OBART02G32320 I 0.837
OGLUM02G32960 Oryza glumaepatula OGLUM02G32960 I 0.837
OLONG_016325 Oryza longistaminata OLONG_016325 I 0.816
OMERI02G30990 Oryza meridionalis OMERI02G30990 I 0.857
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.959
ONIVA06G04700 Oryza nivara ONIVA06G04700 I 0.837
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.959
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.837
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.959
ORGLA02G0278600 Oryza glaberrima ORGLA02G0278600 I 0.837
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.959
ORUFI02G34010 Oryza rufipogon ORUFI02G34010 I 0.837
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.959
OS06G0228950 Oryza sativa OS06G0228950 I 0.959
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.776
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.980
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I 0.735
Si008273m.g Setaria italica Si008273m.g I 0.980
Si020172m.g Setaria italica Si020172m.g I 0.838
TCM_014009 Theobroma cacao TCM_014009 I 0.755
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.776
Traes_6DL_8ECBBC867 Triticum aestivum Traes_6DL_8ECBBC867 I 0.735
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.878
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.918
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.776
Ca_13151 Cicer arietinum Ca_13151 I 0.776
Ca_27191 Cicer arietinum Ca_27191 I 0.714
Cla019404 Citrullus lanatus Cla019404 I 0.755
Pm024905 Prunus mume Pm024905 I 0.776
30138.m004071 Ricinus communis 30138.m004071 I 0.816
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.776
mg020279m Mimulus guttatus mg020279m I 0.837
mgf022310m Mimulus guttatus mgf022310m I 0.776
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.776
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.796
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.735
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.735
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.796
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.755
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.776
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.735
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.776
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.714
Lus10035008.g Linum usitatissimum Lus10035008.g I 0.735
MDP0000261199 Malus domestica MDP0000261199 I 0.776
MDP0000266172 Malus domestica MDP0000266172 I 0.816
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.735
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.857
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.878
Pavir.J13146 Panicum virgatum Pavir.J13146 I 1.000
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.776
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.755
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.837
AMTR_s00021p00218190 Amborella trichopoda AMTR_s00021p00218190 N 0.735
RKD3 Arabidopsis thaliana AT5G66990 N 0.714
BGIOSGA001434 Oryza indica BGIOSGA001434 N 0.735
BRADI1G45170 Brachypodium distachyon BRADI1G45170 N 0.796
BRADI2G40920 Brachypodium distachyon BRADI2G40920 N 0.755
BRADI3G59410 Brachypodium distachyon BRADI3G59410 N 0.796
F775_03178 Aegilops tauschii F775_03178 N 0.735
GRMZM2G071322 Zea mays GRMZM2G071322 N 0.714
GSMUA_Achr4G08610_001 Musa acuminata GSMUA_Achr4G08610_001 N 0.714
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N 0.735
LPERR01G16660 Leersia perrieri LPERR01G16660 N 0.735
LPERR02G26470 Leersia perrieri LPERR02G26470 N 0.816
OBART01G19230 Oryza barthii OBART01G19230 N 0.735
OGLUM01G22860 Oryza glumaepatula OGLUM01G22860 N 0.755
ONIVA01G21910 Oryza nivara ONIVA01G21910 N 0.735
OPUNC01G19590 Oryza punctata OPUNC01G19590 N 0.735
ORUFI01G21630 Oryza rufipogon ORUFI01G21630 N 0.735
Sb03g025130 Sorghum bicolor Sb03g025130 N 0.714
Sb04g028040 Sorghum bicolor Sb04g028040 N 0.755
Si005102m.g Setaria italica Si005102m.g N 0.735
Si019159m.g Setaria italica Si019159m.g N 0.826
fgenesh1_pg.scaffold_823000001 Physcomitrella patens fgenesh1_pg.scaffold_823000001 N 0.735
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.735
Pavir.Ea01492 Panicum virgatum Pavir.Ea01492 N 0.755
Pavir.Eb01347 Panicum virgatum Pavir.Eb01347 N 0.755
Pavir.J17077 Panicum virgatum Pavir.J17077 N 0.718
PDK_20s1788591g001 Phoenix dactylifera PDK_20s1788591g001 N 0.714