Cagra.2350s0098 (Capsella grandiflora)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cagra.2350s0098 T334406_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.550 0.609
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2350s0098.1.p Sox 30 99

Links

Other Sox family TFs
Other Capsella grandiflora TFs

233 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMG-1 Pisum sativum Q41026_PEA D 0.550
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.432
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.690
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.502
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.559
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.427
HMGB2 Arabidopsis thaliana AT1G20693 I 0.553
HMGB3 Arabidopsis thaliana AT1G20696 I 0.510
HMGB4 Arabidopsis thaliana AT2G17560 I 0.617
HMGB1 Arabidopsis thaliana AT3G51880 I 0.537
HMGB5 Arabidopsis thaliana AT4G35570 I 0.628
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.528
Bo1g006360 Brassica oleracea Bo1g006360 I 0.610
Bo5g030580 Brassica oleracea Bo5g030580 I 0.483
Bo7g014280 Brassica oleracea Bo7g014280 I 0.591
Bo7g061420 Brassica oleracea Bo7g061420 I 0.513
Bo7g101270 Brassica oleracea Bo7g101270 I 0.537
Bo7g117500 Brassica oleracea Bo7g117500 I 0.610
Bo8g070350 Brassica oleracea Bo8g070350 I 0.513
Bo8g081200 Brassica oleracea Bo8g081200 I 0.524
Bra002073 Brassica rapa Bra002073 I 0.591
Bra011624 Brassica rapa Bra011624 I 0.610
Bra017723 Brassica rapa Bra017723 I 0.610
Bra025838 Brassica rapa Bra025838 I 0.510
Bra037266 Brassica rapa Bra037266 I 0.617
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.576
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.500
F775_05073 Aegilops tauschii F775_05073 I 0.425
F775_27510 Aegilops tauschii F775_27510 I 0.576
F775_30706 Aegilops tauschii F775_30706 I 0.430
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.537
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.553
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.510
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.620
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.539
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.539
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.565
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.565
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.540
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.449
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.540
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.478
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.510
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.470
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.576
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.545
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.582
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.572
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.464
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.464
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.572
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.582
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.582
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.482
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.576
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.547
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.546
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.584
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.550
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.492
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.525
OB01G34910 Oryza brachyantha OB01G34910 I 0.425
OB06G35870 Oryza brachyantha OB06G35870 I 0.576
OB09G25530 Oryza brachyantha OB09G25530 I 0.482
OBART06G28090 Oryza barthii OBART06G28090 I 0.582
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.582
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.582
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.582
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.488
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.582
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.488
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.582
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.582
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.488
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.582
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.488
OS06G0728000 Oryza sativa OS06G0728000 I 0.582
OS09G0551600 Oryza sativa OS09G0551600 I 0.488
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.539
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.572
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.517
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.539
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.510
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.539
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.462
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.502
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.582
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.540
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.529
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.540
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.510
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.576
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.495
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.467
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.467
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.495
Si007288m.g Setaria italica Si007288m.g I 0.582
Si031512m.g Setaria italica Si031512m.g I 0.510
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.539
TCM_000068 Theobroma cacao TCM_000068 I 0.563
TCM_021706 Theobroma cacao TCM_021706 I 0.545
TCM_034406 Theobroma cacao TCM_034406 I 0.539
TCM_042534 Theobroma cacao TCM_042534 I 0.489
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.425
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.500
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.500
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.430
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.430
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.430
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.576
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.482
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.430
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.556
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.572
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.502
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.529
Ca_04825 Cicer arietinum Ca_04825 I 0.570
Ca_05351 Cicer arietinum Ca_05351 I 0.506
Ca_09896 Cicer arietinum Ca_09896 I 0.525
Ca_10725 Cicer arietinum Ca_10725 I 0.588
Ca_19340 Cicer arietinum Ca_19340 I 0.588
Cla009093 Citrullus lanatus Cla009093 I 0.566
Cla018386 Citrullus lanatus Cla018386 I 0.539
Cla023817 Citrullus lanatus Cla023817 I 0.598
Pm002934 Prunus mume Pm002934 I 0.582
Pm018913 Prunus mume Pm018913 I 0.529
Pm026798 Prunus mume Pm026798 I 0.538
29600.m000548 Ricinus communis 29600.m000548 I 0.486
29669.m000844 Ricinus communis 29669.m000844 I 0.473
29701.m000600 Ricinus communis 29701.m000600 I 0.548
30170.m014386 Ricinus communis 30170.m014386 I 0.549
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.431
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.549
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.549
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.549
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.454
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.529
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.549
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.555
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.555
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.555
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.555
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.528
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.598
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.566
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.531
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.511
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.511
mgf000913m Mimulus guttatus mgf000913m I 0.422
mgf006113m Mimulus guttatus mgf006113m I 0.504
mgf008076m Mimulus guttatus mgf008076m I 0.504
mgf009330m Mimulus guttatus mgf009330m I 0.556
mgf014518m Mimulus guttatus mgf014518m I 0.511
mgf016363m Mimulus guttatus mgf016363m I 0.579
mgf016608m Mimulus guttatus mgf016608m I 0.504
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.478
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.579
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.537
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.529
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.620
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.537
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.510
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.553
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.681
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.537
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.620
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.510
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.553
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.741
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.553
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.510
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.620
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.524
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.539
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.538
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.554
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.509
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.572
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.541
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.481
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.579
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.462
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.512
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.544
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.539
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.602
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.598
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.591
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.566
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.539
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.572
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.539
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.572
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.506
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.438
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.528
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.528
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.489
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.495
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.489
MDP0000275042 Malus domestica MDP0000275042 I 0.566
MDP0000362980 Malus domestica MDP0000362980 I 0.529
MDP0000607529 Malus domestica MDP0000607529 I 0.523
MDP0000757111 Malus domestica MDP0000757111 I 0.529
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.509
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.538
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.539
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.542
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.510
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.510
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.582
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.436
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.582
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.510
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.534
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.517
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.539
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.496
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.534
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.539
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.494
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.537
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.617
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.596
PK11149.1 Cannabis sativa PK11149.1 I 0.552
PK14705.1 Cannabis sativa PK14705.1 I 0.421
PK29786.1 Cannabis sativa PK29786.1 I 0.604
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.544
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.512
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.550
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.529
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.460
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.416