HMPREF1541_03377 (Cyphellophora europaea)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 HMPREF1541_03377 T342628_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.910 0.910
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.910 0.910
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.910 0.910
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.820 0.820
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.820 0.820
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.820 0.820
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.820 0.820
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.820 0.820
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.820 0.820
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.820 0.820
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.820 0.820
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.820 0.820
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.820 0.820
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ETN41441 TBP 80 162
ETN41441 TBP 170 253

Links

Other TBP family TFs
Other Cyphellophora europaea TFs

765 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
EIL3 Arabidopsis thaliana AT1G73730 D
OS09G0490200 Oryza sativa OS09G0490200 D
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I
Solyc01g006650.1 Solanum lycopersicum Solyc01g006650.1 I
Carubv10020043m.g Capsella rubella Carubv10020043m.g I
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I
Aquca_007_00017 Aquilegia coerulea Aquca_007_00017 I
mgf020935m Mimulus guttatus mgf020935m I
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I
Cucsa.143220 Cucumis sativus Cucsa.143220 I
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I
30169.m006395 Ricinus communis 30169.m006395 I
Pm028171 Prunus mume Pm028171 I
Ca_02669 Cicer arietinum Ca_02669 I
EIL3 Vitis vinifera VIT_06s0004g01610 I
Traes_5BL_B6051DD37 Triticum aestivum Traes_5BL_B6051DD37 I
Traes_5AL_B65EF5518 Triticum aestivum Traes_5AL_B65EF5518 I
TCM_040510 Theobroma cacao TCM_040510 I
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I
PDK_20s1301801g002 Phoenix dactylifera PDK_20s1301801g002 I
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I
PK19114.1 Cannabis sativa PK19114.1 I
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I
Pavir.J14329 Panicum virgatum Pavir.J14329 I
Pavir.J02229 Panicum virgatum Pavir.J02229 I
Pavir.Ib01512 Panicum virgatum Pavir.Ib01512 I
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I
MDP0000565880 Malus domestica MDP0000565880 I
MDP0000562585 Malus domestica MDP0000562585 I
MDP0000490180 Malus domestica MDP0000490180 I
Lus10031817.g Linum usitatissimum Lus10031817.g I
Lus10031245.g Linum usitatissimum Lus10031245.g I
Gorai.013G250300 Gossypium raimondii Gorai.013G250300 I
Gorai.010G128700 Gossypium raimondii Gorai.010G128700 I
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I
GLYMA15G03650 Glycine max GLYMA15G03650 I
OB09G21280 Oryza brachyantha OB09G21280 I
MTR_2g098470 Medicago truncatula MTR_2g098470 I
MLOC_10823 Hordeum vulgare MLOC_10823 I
LPERR09G10870 Leersia perrieri LPERR09G10870 I
LPERR08G16890 Leersia perrieri LPERR08G16890 I
GSMUA_Achr9G27680_001 Musa acuminata GSMUA_Achr9G27680_001 I
GSMUA_Achr8G25580_001 Musa acuminata GSMUA_Achr8G25580_001 I
GSMUA_Achr3G11160_001 Musa acuminata GSMUA_Achr3G11160_001 I
GRMZM2G006752 Zea mays GRMZM2G006752 I
OBART09G14750 Oryza barthii OBART09G14750 I
GLYMA13G41751 Glycine max GLYMA13G41751 I
F775_17920 Aegilops tauschii F775_17920 I
BRADI4G33750 Brachypodium distachyon BRADI4G33750 I
Bra015970 Brassica rapa Bra015970 I
Bra008110 Brassica rapa Bra008110 I
Bra003831 Brassica rapa Bra003831 I
Bo6g118030 Brassica oleracea Bo6g118030 I
Bo6g087550 Brassica oleracea Bo6g087550 I
BGIOSGA029545 Oryza indica BGIOSGA029545 I
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I
Si029259m.g Setaria italica Si029259m.g I
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I
EIL3 Arabidopsis lyrata scaffold_202309.1 I
Sb02g028390 Sorghum bicolor Sb02g028390 I
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I
POPTR_0001s05370 Populus trichocarpa POPTR_0001s05370 I
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I
Si034616m.g Setaria italica Si034616m.g I
PGSC0003DMG400021381 Solanum tuberosum PGSC0003DMG400021381 I
ORUFI09G15900 Oryza rufipogon ORUFI09G15900 I
ORGLA09G0113600 Oryza glaberrima ORGLA09G0113600 I
OPUNC09G13210 Oryza punctata OPUNC09G13210 I
ONIVA08G17420 Oryza nivara ONIVA08G17420 I
OMERI09G11470 Oryza meridionalis OMERI09G11470 I
OMERI05G02190 Oryza meridionalis OMERI05G02190 I
OGLUM09G15380 Oryza glumaepatula OGLUM09G15380 I