Bra015970 (Brassica rapa)
EIN3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04873 (EIN3) IPR006957 Bra015970 T175025_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EIL3
M00723_2.00 		Arabidopsis thaliana
NAGRTWCATNN
NNATGWAYCTN		 PBM
Chang et al.(2013)
pTH7933 		0.940 0.940
EIL3
M06877_2.00 		Arabidopsis thaliana
NYGTCYAGRTWCAWDNWHNHH
DDNDWNHWTGWAYCTRGACRN		 Dap-seq
OMalley et al.(2016)
EIL3_col_b 		0.940 0.940
OS09G0490200
M01970_2.00 		Oryza sativa
NMGRTACATNN
NNATGTAYCKN		 PBM
Weirauch et al.(2014)
pTH9013 		0.754 0.754
e_gw1.87.73.1
M00726_2.00 		Physcomitrella patens
NNNRTDCDBN
NVHGHAYNNN		 PBM
Chang et al.(2013)
pTH8479 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra015970.1-P EIN3 41 288

Links

Other EIN3 family TFs
Other Brassica rapa TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g118030 Brassica oleracea Bo6g118030 I 0.988
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I 0.959
EIL3 Arabidopsis thaliana AT1G73730 D 0.947
EIL3 Arabidopsis lyrata scaffold_202309.1 I 0.944
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I 0.944
Carubv10020043m.g Capsella rubella Carubv10020043m.g I 0.944
Bra008110 Brassica rapa Bra008110 I 0.931
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I 0.931
Bo6g087550 Brassica oleracea Bo6g087550 I 0.911
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I 0.851
30169.m006395 Ricinus communis 30169.m006395 I 0.843
Cucsa.143220 Cucumis sativus Cucsa.143220 I 0.839
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I 0.834
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I 0.831
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I 0.827
PK19114.1 Cannabis sativa PK19114.1 I 0.827
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I 0.826
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I 0.823
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I 0.823
MDP0000490180 Malus domestica MDP0000490180 I 0.823
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I 0.823
EIL3 Vitis vinifera VIT_06s0004g01610 I 0.819
Pm028171 Prunus mume Pm028171 I 0.819
Lus10031245.g Linum usitatissimum Lus10031245.g I 0.819
MDP0000562585 Malus domestica MDP0000562585 I 0.819
MDP0000565880 Malus domestica MDP0000565880 I 0.819
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.819
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I 0.818
TCM_040510 Theobroma cacao TCM_040510 I 0.815
Ca_02669 Cicer arietinum Ca_02669 I 0.815
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I 0.815
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I 0.810
Bra003831 Brassica rapa Bra003831 I 0.806
GLYMA15G03650 Glycine max GLYMA15G03650 I 0.806
MTR_2g098470 Medicago truncatula MTR_2g098470 I 0.806
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.806
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I 0.806
Gorai.010G128700 Gossypium raimondii Gorai.010G128700 I 0.806
Lus10031817.g Linum usitatissimum Lus10031817.g I 0.806
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.798
cassava30700.valid.m1 Manihot esculenta cassava30700.valid.m1 I 0.797
Aquca_007_00017 Aquilegia coerulea Aquca_007_00017 I 0.794
mgf020935m Mimulus guttatus mgf020935m I 0.789
Solyc01g006650.1 Solanum lycopersicum Solyc01g006650.1 I 0.782
PGSC0003DMG400021381 Solanum tuberosum PGSC0003DMG400021381 I 0.781
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I 0.770
GSMUA_Achr9G27680_001 Musa acuminata GSMUA_Achr9G27680_001 I 0.762
Si029259m.g Setaria italica Si029259m.g I 0.762
Pavir.J14329 Panicum virgatum Pavir.J14329 I 0.762
Pavir.J02229 Panicum virgatum Pavir.J02229 I 0.759
OBART09G14750 Oryza barthii OBART09G14750 I 0.758
OGLUM09G15380 Oryza glumaepatula OGLUM09G15380 I 0.758
OMERI09G11470 Oryza meridionalis OMERI09G11470 I 0.758
ONIVA08G17420 Oryza nivara ONIVA08G17420 I 0.758
ORGLA09G0113600 Oryza glaberrima ORGLA09G0113600 I 0.758
OB09G21280 Oryza brachyantha OB09G21280 I 0.755
BGIOSGA029545 Oryza indica BGIOSGA029545 I 0.754
ORUFI09G15900 Oryza rufipogon ORUFI09G15900 I 0.754
OS09G0490200 Oryza sativa OS09G0490200 D 0.754
GRMZM2G006752 Zea mays GRMZM2G006752 I 0.750
F775_17920 Aegilops tauschii F775_17920 I 0.746
MLOC_10823 Hordeum vulgare MLOC_10823 I 0.746
OPUNC09G13210 Oryza punctata OPUNC09G13210 I 0.746
Traes_5BL_B6051DD37 Triticum aestivum Traes_5BL_B6051DD37 I 0.746
LPERR09G10870 Leersia perrieri LPERR09G10870 I 0.743
Sb02g028390 Sorghum bicolor Sb02g028390 I 0.743
BRADI4G33750 Brachypodium distachyon BRADI4G33750 I 0.742
GSMUA_Achr3G11160_001 Musa acuminata GSMUA_Achr3G11160_001 I 0.742
GSMUA_Achr8G25580_001 Musa acuminata GSMUA_Achr8G25580_001 I 0.742
Traes_5AL_B65EF5518 Triticum aestivum Traes_5AL_B65EF5518 I 0.742
PDK_20s1301801g002 Phoenix dactylifera PDK_20s1301801g002 I 0.742
Gorai.013G250300 Gossypium raimondii Gorai.013G250300 I 0.738
Traes_4BL_F34EBD618 Triticum aestivum Traes_4BL_F34EBD618 I 0.734
POPTR_0001s05370 Populus trichocarpa POPTR_0001s05370 I 0.733
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.726
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.722
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.718
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.718
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.714
LPERR08G16890 Leersia perrieri LPERR08G16890 I 0.714
MLOC_10315 Hordeum vulgare MLOC_10315 I 0.711
TCM_042022 Theobroma cacao TCM_042022 I 0.711
Traes_7BS_733347AC0 Triticum aestivum Traes_7BS_733347AC0 I 0.711
Traes_7DS_3673F1C73 Triticum aestivum Traes_7DS_3673F1C73 I 0.711
Traes_7AS_34D476D5D1 Triticum aestivum Traes_7AS_34D476D5D1 I 0.710
TRIUR3_28079 Triticum urartu TRIUR3_28079 I 0.710
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.710
SELMODRAFT_449238 Selaginella moellendorffii SELMODRAFT_449238 I 0.709
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.707
VIT_13s0047g00250 Vitis vinifera VIT_13s0047g00250 I 0.703
Bra000528 Brassica rapa Bra000528 I 0.702
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.702
OMERI08G16770 Oryza meridionalis OMERI08G16770 I 0.702
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.702
Ciclev10014617m.g Citrus clementina Ciclev10014617m.g I 0.702
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.702
orange1.1g007017m.g Citrus sinensis orange1.1g007017m.g I 0.702